Pseudomonas knackmussii: PKB_3747
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Entry
PKB_3747 CDS
T03081
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pkc
Pseudomonas knackmussii
Pathway
pkc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PKB_3747
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkc03019
]
PKB_3747
03009 Ribosome biogenesis [BR:
pkc03009
]
PKB_3747
Enzymes [BR:
pkc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PKB_3747
Messenger RNA biogenesis [BR:
pkc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PKB_3747
Ribosome biogenesis [BR:
pkc03009
]
Prokaryotic type
rRNA processing factors
PKB_3747
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
CDF85085
UniProt:
A0A024HJA0
LinkDB
All DBs
Position
3918665..3921814
Genome browser
AA seq
1049 aa
AA seq
DB search
MPIAVSGSPGNHWYYMKRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGR
ITRVEPSLEAAFVDFGAERHGFLPLKEISREYFKKNPEGRINIKDVLSEGQEVIVQVEKE
ERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLNAPGDMGLI
VRTAGLGRSSEELQWDLDYLLQLWGAIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIG
EVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSG
GSIVIDPTEALVSIDINSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFI
DMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCN
GQGIIRDVESLSLAILRLIEEEALKDRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRA
RIFILPDDHLETPHFEVQRLRDDSPELAAGHSSYEMAHVEHEEVQPVSSTRTLVRQEAAV
KTVAPQTPVPQQVEAAQPVAEPAKPMPEPSLFQGLVKSLVSLFAGKQEEPKVAATPEKPA
AERSNQEERRNGRQQNRRRDGGRRDEERKPREERGERRRDERGERPGREERAERQPREER
QPREERAERQPREERQPREERAERQPREDRQPREERAERQPREERQPREERAERQPREDR
QPREERAERQPREDRQPREERAERQPREERQPREERGERPPREDRQARDAASLEAEELPN
EELLDQQDDQEGGDDERPRRRSRGQRRRSNRRERQREAGADGMEAGEQQEGGEAPSAPAL
TAAGVAAVAVVAEQVVEAATSHATETATSEATTEVAAVSEAHVESTVEQVAESSQPSEAA
PISDEVAVTEPVAEATVVEAPAVAAEVEAPATPEPAQAEAAVAANATGRALNDPRERRRL
QREAERLAREAAEAAAAAPAVVEAPAATEESAVAVEAAAEESVLEVVSEAVEAPTEAPAA
EAAQASEGEQAEQALEQHAHHEAVEKHHS
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
gtgccgattgccgtttccggcagccccggaaaccattggtactacatgaaaagaatgctg
atcaacgcaactcaacccgaagagttgcgtgtagcgctggtagacggccagcgcctgttc
gacctggacatcgagtccggcgcgcgcgaacagaaaaaggccaacatctataaaggccgc
atcacccgcgtcgaaccgagcctcgaggccgccttcgtcgacttcggcgccgagcgccac
ggcttcctgccgctcaaggaaatctcccgcgagtacttcaagaagaaccccgaagggcgc
atcaacatcaaggatgtgctgagcgagggccaggaagtcatcgtccaggtcgagaaagaa
gagcgcggcaacaagggcgcggccctgaccaccttcatcagcctggccggccgctacctc
gtcctgatgccgaacaacccccgtgccggcggcatttcccgtcgcatcgagggcgaagag
cgcaacgaactgcgtgaagcgctgaacggcctgaacgcaccgggcgacatgggcctgatc
gtccgcaccgcgggcctgggccgcagctccgaagagctgcaatgggacctggactacctg
ctgcaactgtggggcgccatcaaggaagcctccggcgagcgcggcgcgcctttcctgatc
taccaggaaagcaacgtcatcatccgcgccatccgcgactacctgcgccaggacatcggc
gaagtgctgatcgacagcatcgacgcccaggaagaagcactgaacttcatccgccaggta
atgccgcagtacgccagcaaggtgaagctctatcaggacagcgttccgctgttcaatcgc
ttccagatcgaaagccagatcgaaactgccttccagcgcgaagtgaagctgccgtcgggc
ggctccatcgtcatcgacccgaccgaagccctggtgtccatcgacatcaactcggcgcgc
gccaccaaaggcggcgacatcgaagaaaccgcgctgcagaccaacctggaagcggccgaa
gagatcgcccgccagctgcgtctgcgtgacatcggcggcctgatcgtcatcgacttcatc
gacatgaccccggcgaagaaccagcgcgccgtcgaagaacgcgttcgcgaagccctcgag
gccgaccgtgcgcgcgtccaggtcggccgcatctcgcgcttcggcctgctggaaatgtcc
cgtcagcgcctgcgtccgtccctcggcgagaccagcggcatcgtctgcccgcgctgcaac
ggccaaggcatcatccgtgacgtcgagtccctgtcgctggccatcctgcgcctgatcgaa
gaggaagccctgaaggaccgcaccgcggaagtccgcgctcgcgttccgttccaggtcgcc
gccttcctgctcaacgagaagcgcaacgccatcaccaagatcgagctgcgcacccgcgcg
cgcatcttcatcctcccggacgaccatctggaaactccgcacttcgaagtgcagcgtctg
cgtgacgacagccccgagctggccgccggccactccagctacgaaatggcccacgtcgag
cacgaggaagtccaaccggtcagctccacccgcaccctggttcgtcaggaagccgcggtg
aagaccgttgctccgcagaccccggtcccgcagcaagtcgaagccgcgcagccggttgcc
gaacccgccaagccgatgcccgagccgagcctgttccagggcctggtgaagtcgctggtc
agcctgttcgccggcaagcaggaagagcccaaggttgccgccactccggagaagccggct
gctgagcgcagcaaccaggaagaacgtcgcaacggtcgccagcagaaccgtcgtcgcgac
ggtggccgccgcgatgaagaacgcaaaccgcgcgaagagcgtggcgagcgccgtcgtgac
gagcgcggtgagcgcccgggccgcgaagagcgcgccgaacgtcaaccgcgtgaagagcgt
cagccccgtgaagaacgcgccgagcgacaaccgcgtgaagagcgtcagccgcgtgaagag
cgcgccgaacgtcaaccgcgcgaagaccgtcagccccgcgaagaacgcgccgagcgtcaa
ccgcgtgaagagcgtcagccccgcgaagagcgcgccgaacgtcaaccgcgcgaagaccgc
cagccccgcgaagagcgtgccgagcgtcaaccgcgcgaagaccgccagccgcgtgaagag
cgcgccgagcgtcagccccgtgaagagcgtcaaccccgcgaagagcgtggcgagcgtccg
ccacgtgaagaccgccaggcccgcgatgccgccagcctggaggccgaagagctgccgaac
gaggaactgctggaccagcaggatgaccaggaaggtggcgatgacgagcgtccgcgccgt
cgttcccgtggccagcgccgccgcagcaaccgccgcgagcgtcagcgtgaagccggtgcc
gatggcatggaagccggtgagcagcaggaaggcggcgaagccccgtccgctcctgccctg
accgctgccggtgtcgcagccgttgccgtggttgccgagcaggttgttgaagcagccacc
tcgcacgccaccgagaccgccaccagcgaagccaccactgaagtcgcggccgtcagcgaa
gctcacgtggaaagcaccgtcgagcaggtggccgagtccagccagccgagcgaagctgca
ccgatcagcgacgaagttgccgtgaccgagccggtcgccgaagcaacggttgtcgaagct
ccggccgtcgccgccgaagtcgaggcccccgccactccggagcctgcacaagccgaagcc
gctgttgccgccaacgccacgggccgtgcgctgaacgacccgcgcgagcgtcgtcgcctg
cagcgtgaagccgagcgcctggctcgcgaagccgccgaggccgctgctgccgctcctgcg
gtagtcgaagctcctgctgcaaccgaggaaagcgcggttgcggtagaagccgctgccgaa
gaaagcgtgctggaagtggtcagcgaagccgttgaggctccgactgaagccccggccgcc
gaagcggcacaagccagcgaaggcgagcaggccgagcaagcgctcgagcagcacgcccat
catgaagccgtggaaaagcaccacagctga
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