Pseudomonas kielensis: Q1W70_02240
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Entry
Q1W70_02240 CDS
T09328
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pkj
Pseudomonas kielensis
Pathway
pkj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q1W70_02240 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkj03019
]
Q1W70_02240 (rne)
03009 Ribosome biogenesis [BR:
pkj03009
]
Q1W70_02240 (rne)
Enzymes [BR:
pkj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Q1W70_02240 (rne)
Messenger RNA biogenesis [BR:
pkj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Q1W70_02240 (rne)
Ribosome biogenesis [BR:
pkj03009
]
Prokaryotic type
rRNA processing factors
Q1W70_02240 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
WKL53429
LinkDB
All DBs
Position
428422..431619
Genome browser
AA seq
1065 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEAHTNQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPV
EVAAAPVAAPAAVPEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPAAERPARNEERRNGR
QQSRNRNGRRDEERKPREERAPREERAPREPREERQPREAREETPTVAREERAPRAPREE
RAPRPPREERKPRGDREDRPVRELREPLDAAPAAATAAVAATAVAEERPARQPREERAPR
PPREERQPRAEQAAAPVAEEELVTSEEQLSEDGQDNAEGDRPRRRSRGQRRRSNRRERQR
DANGNVIEGSEESEGNEEPTGAELAAGLAVTAAVASSVISAPAEAEAHQQAERATAAVTE
DVAQPTAEVEAPAVEATTPVEAPAAPAVEVAPVVEAQVVEAQPQVVAEAEAVVHTPVAVE
AVVEAPVVVEAPAVEAPVAEQAPEAREEQTAFNWVAEPAVVEAVVTEVVAPVAPVVAEPA
PVEAPVVAEAAAPVVETAPVVEAAPAVVLTENGRAPNDPREVRRRKREAERLQKEAELAA
AAAPVAEVAAEPAAPAIDENLRSVEEVVEQHPEALEKEHEPKPLA
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagat
ggccagcgcctctacgacctggacatcgaatccggtgcacgcgagcagaagaaggccaac
atctataaaggccggattactcgcatcgaaccaagccttgaggctgcctttgtcgatttc
ggctctgagcgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gctcctgaaggtcgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtt
caggtcgaaaaagaagaacgtggcaacaagggcgccgccctgaccaccttcatcagcctg
gccggtcgttacctggtgctgatgccaaacaacccacgtgctggcggtatctcccgtcgc
atcgagggtgaagagcgcaacgaactgcgtgaagccctgaacggcctggttgccccggct
gacatgggtctgatcgtgcgcactgccggccttggccgcagcagcgaagaaatgcagtgg
gacctcgactacctgctgcaactgtggaccgccatcaaagaagcctcgctggatcgctcc
gcgccattcctgatctaccaggaaagcaacgtgatcatccgcgcgatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtg
ccgctgttcaaccgtttccagatcgaaagccagatcgagaccgctttccagcgcgtcgtt
gaactgccttccggcggctccatcgtcatcgatccaaccgaagccctggtgtccatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
cttgaagccgccgaagaaatcgcccgtcagttgcgcctgcgcgacatcggcggcctgatc
gtcatcgacttcatcgacatgacccctgccaagaaccagcgcgccgtggaagaaaaagtc
cgcgaatgcctggaagccgaccgcgctcgcgtgcaagtcggtcgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgtccatcgctcggcgaaagcagcggcatcgtc
tgcccgcgttgcaacggcaccggcatcatccgtgacgttgaatcgctgtcgctggcgatc
ctgcgcctgatcgaagaagaagccctgaaagaccgcactgccgaagttcgcgcccaggtg
ccgatcccggtggcagcgttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgcgcccgcatcgtcatcctgccgaacgatcacctcgagacaccgcacttc
gaagtgcagcgcctgcgcgatgacagcccggaagcccacaccaaccagtccagctacgaa
atcgcagctgccgcggctgaagtggaagaagtgcaaccggccgccgccacccgcaccctg
gttcgccaggaagccgcggtgaagactgccccagcccgtgccaacgcaccggtgccggtt
gaagtcgcagcagctccggtagccgctccggctgccgtgccagagccaagcctgttcaag
ggcctggtgaagtcgctggtcagcctgttcgccaccaaggaagagccagccgctccggta
gtggttgaaaaacctgccgccgagcgtccagcccgcaatgaagagcgtcgcaacggccgt
cagcagagccgcaaccgtaacggtcgccgcgatgaagaacgcaagccacgcgaagaacgt
gcaccgcgtgaagaacgcgctccacgtgagccgcgcgaagagcgccaaccacgcgaagcc
cgtgaagagaccccgaccgttgctcgcgaagagcgcgcacctcgcgccccacgtgaagag
cgtgctccacgcccaccccgtgaagagcgcaagccacgtggcgatcgtgaagaccgtccg
gtacgtgaactgcgtgagcctctggatgccgcccccgccgctgctactgccgctgttgct
gctaccgccgtcgctgaagagcgcccagctcgtcagccacgcgaagagcgtgcaccgcgt
ccgccgcgtgaagagcgtcaaccacgtgccgaacaggctgctgccccggttgccgaagaa
gaactggtaaccagcgaagagcaactgtcggaagatggtcaggacaacgccgaaggcgat
cgtccacgtcgccgctcccgtggccagcgtcgccgcagcaaccgtcgcgagcgtcaacgt
gatgccaacggcaacgtgatcgaaggctcggaagagtccgaaggcaacgaagagcctacg
ggcgctgaactggctgccggcctggccgtgaccgcagcggttgccagcagcgtgatcagt
gctccagccgaagccgaggctcatcagcaagctgagcgcgctaccgccgccgtgactgaa
gacgttgctcagccaaccgctgaggttgaagcacccgccgtggaagccaccaccccagtc
gaagcgccagccgctcctgctgtagaagtggcgcccgtggttgaagcccaggttgttgaa
gcacaaccgcaagtagtggctgaagccgaagccgtggtgcacacacctgtcgctgtagaa
gcggtagtcgaagcccctgtggtggttgaagcacctgctgtcgaagcgccggtagccgaa
caggcacctgaagcccgcgaagagcagaccgccttcaactgggtagccgagccagccgtg
gttgaagccgtagtcaccgaggttgtggcaccggttgcccctgtggttgccgagccagcg
ccagttgaagcgccagtcgtggccgaagcggctgccccggttgtcgaaactgcacccgtt
gtcgaagctgcaccagccgtggtcctgaccgaaaacggtcgcgcaccgaacgacccacgt
gaagtgcgtcgccgcaagcgtgaagccgagcgcctgcagaaggaagccgaactggctgcc
gctgctgcaccggtcgctgaagtcgctgccgagcctgctgcccctgccatcgacgaaaac
ctgcgttccgtcgaagaagtggtagagcaacaccctgaggccctggaaaaagagcacgag
cctaaacccctcgcctga
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