Pseudomonas kurunegalensis: QQ992_07685
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Entry
QQ992_07685 CDS
T09327
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pkk
Pseudomonas kurunegalensis
Pathway
pkk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QQ992_07685 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkk03019
]
QQ992_07685 (rne)
03009 Ribosome biogenesis [BR:
pkk03009
]
QQ992_07685 (rne)
Enzymes [BR:
pkk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QQ992_07685 (rne)
Messenger RNA biogenesis [BR:
pkk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QQ992_07685 (rne)
Ribosome biogenesis [BR:
pkk03009
]
Prokaryotic type
rRNA processing factors
QQ992_07685 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WJD64167
LinkDB
All DBs
Position
complement(1708197..1711358)
Genome browser
AA seq
1053 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLTVPGDMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALT
FIRQVMPQYASKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHF
EVQRLRDDNPEVLNNQSSYEIAASEAEEAPQPTATRTLVRQEAAVKTAPARANAPVPAAA
EEQQPAAPVAPAPSAPEPSLFKGLVKSLVSLFAGKDEPAAAPVVTTAAEKPAAERSPRNE
ERRNGRQQSRNRNGRRDEERKPREERAERAPREERQPREERAPREERAPREERAPREERA
PREERAPRQPREDRRSNRGEERVRELREPLDATPPAEREERQPREERVAREERAPREERA
PREERAPREERAPREERAPREERAPRPPREERQPRVAEEAAEQAAELAEEQLPNEELLQD
EQEGTDGERPRRRSRGQRRRSNRRERQRNANGELIDGEEEGSEEQPQQHQATELGAELAA
GLAVTAAVASSNISADAEAQANQQAERATAEVAVVAETDNSEATQPVEQAEKVEQAEAVA
KAEEVAVAPVVEQPVSEPVVVAEVTAAPVVEVAPQPAVEEAPAAEPVVVAEAPVEAPVVE
AAPVVEQPAAVIEAQPDVVAEPAPVVEPAPVEAPAAVEPATVMLANGRAPNDPREVRRRK
REAEAAAKAAQEAAAASEEPALEAADEHKPHHG
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcgactcaacccgaagagttgcgtgtagccctggtggac
ggccaacgtctctacgacctggacatcgagtccggtgcgcgcgagcagaaaaaggccaac
atctacaaaggcaagatcacccgcatcgaacccagcctcgaagccgccttcgtcgacttc
ggctccgaacgtcacggcttcctgccgctgaaagaaatctcccgcgaatacttcaagaag
gcccccgaaggccgcgtcaacatcaaggaagtgctcagcgaaggccaggaagtcatcgtc
caggtcgagaaggaagagcgcggcaacaaaggcgccgccctcaccaccttcatcagcctg
gccggccgctacctggtactgatgcccaacaacccgcgtgccggtggcatctcccgccgc
atcgaaggcgaagagcgtaacgaactgcgcgaagccctgaacggcctgaccgtgccgggc
gacatgggcctgatcgtgcgcactgccggcctcggccgcagcagcgaagagatgcagtgg
gacctcgactacctgctgcaactgtggaccgccatcaaggaagcgtccctggaccgcgcc
gcgccgttcctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctg
cgccaggacatcggtgaagtgctgatcgacagcatcgacgcccaggaagaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaaagtgaagctgtacgaagacagcgtg
ccgctgttcaaccgcttccagatcgaaagccagatcgaaaccgccttccagcgcgtcgtc
gacctgccgtccggtggctcgatcgtgatcgacccgaccgaagccctggtgtccatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
ctggaagcggccgaagaaatcgcccgccagctgcgcctgcgtgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggcgaagaaccagcgcgccgtggaagagcgcgtt
cgcgaatgcctggaagccgaccgcgcccgcgtgcaggttggccgcatttcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgcccgtcgctgggcgaaagcagcggcatcgtc
tgcccgcgctgctccggcaccggcatcatccgtgacgtcgagtcgctgtcgctggcgatc
ctgcgcctgatcgaagaagaagccctgaaggaccgcaccgccgaagtccgtgctcaggtc
ccgatcccggtagccgcgttcctgctcaacgagaagcgcaactcgattaccaagatcgaa
ctgcgcacccgtgcacgcatcatcatcctgccgaacgaccacctggaaaccccgcacttc
gaagtccagcgcctgcgcgacgacaacccggaagtgctgaacaaccagtccagctacgaa
atcgccgcctccgaagccgaagaagcgccgcagccgaccgccacccgcaccctggtacgc
caggaagccgcagtgaagaccgccccggcccgcgccaatgcgccagtacccgccgccgct
gaagagcagcagcctgccgcaccggtcgcccctgccccgagcgctccggagccaagcctg
ttcaagggcctggtgaagtcgctggtcagcctgttcgccggcaaggacgagcctgctgcc
gcaccggtcgttaccaccgccgccgaaaaaccggctgccgaacgcagcccgcgcaacgaa
gagcgccgcaacggccgccagcaaagccgcaaccgcaacggccgccgcgacgaagagcgc
aagccgcgtgaagagcgtgccgagcgcgcgccacgcgaagaacgccagccacgcgaggaa
cgcgctccgcgcgaagagcgtgcgccacgtgaagaacgcgcaccacgcgaagagcgtgca
ccgcgtgaagaacgcgcaccacgtcagccgcgcgaagaccgccgcagcaaccgtggcgaa
gagcgcgtgcgcgaactgcgcgagccgctggatgccaccccgccagccgaacgtgaagag
cgtcagccacgcgaagagcgtgtagcccgtgaagagcgcgcgccacgcgaagaacgtgca
ccgcgtgaagaacgcgcaccacgcgaagaacgcgcacctcgtgaagaacgcgccccacgc
gaagagcgtgctccacgcccaccacgcgaagagcgtcagccacgggtagccgaagaagca
gctgaacaggctgccgaactggccgaagagcaactgccaaacgaagagctgctgcaagac
gagcaggaaggcaccgatggcgagcgcccgcgccgccgttcccgtggccagcgtcgtcgc
agcaaccgtcgcgagcgtcagcgcaacgccaatggcgagctgatcgacggcgaagaagaa
ggcagcgaagagcagccacaacagcaccaggccaccgagctgggtgccgaactggccgct
ggcctggcagtaactgccgctgtcgccagcagcaacatcagtgccgacgccgaggcccag
gccaaccagcaggccgagcgtgctaccgctgaagttgccgtcgttgcagagaccgacaac
agcgaagccacccagccggttgaacaggctgaaaaagtggagcaggccgaagcggtcgcc
aaagccgaggaagttgccgtggccccagtggtcgagcagcctgtcagcgagccggtggtc
gtggccgaagtcactgccgcgccagtggtcgaagtcgccccgcagccagccgttgaggaa
gcacctgccgccgagccggtcgtggttgccgaggcgccagtggaggccccggtggtcgaa
gccgctccggttgtcgagcagcctgcagcggttattgaagcccagccagacgttgtggcc
gagcctgcacctgtggtcgagccggcaccggtcgaagccccggcagcggtagagcctgct
actgtcatgctggccaacggccgtgcgccgaacgacccgcgtgaagtgcgccgccgcaag
cgtgaggccgaggctgccgccaaagctgcacaggaagctgctgccgcctccgaggagcca
gccctggaagctgccgatgagcacaagcctcatcacggttga
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