Pelagerythrobacter marinus: NCF86_08155
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Entry
NCF86_08155 CDS
T08297
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pmas
Pelagerythrobacter marinus
Pathway
pmas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCF86_08155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmas03019
]
NCF86_08155
03009 Ribosome biogenesis [BR:
pmas03009
]
NCF86_08155
Enzymes [BR:
pmas01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NCF86_08155
Messenger RNA biogenesis [BR:
pmas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCF86_08155
Ribosome biogenesis [BR:
pmas03009
]
Prokaryotic type
rRNA processing factors
NCF86_08155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
USA38314
LinkDB
All DBs
Position
1620847..1623678
Genome browser
AA seq
943 aa
AA seq
DB search
MATRMLIDARHPEETRVAVLKGNRIEEFDFESAEHRQIKGNIYLAKVTRVEPSLQAAFVD
FGGNRHGFLAFSEIHPDYYQIPKEDREQLLAEEAEAAEEEARLRAEEEERGDVPGDEYDA
DDETGESLVEEFAEDGVEEIDTSEKDKVATIEEGQVANGDDDGDDDSDDEEEGNGSRRGR
RGRGRRQGKGRARAKEVDEVRARRQALRRRYKIQDVIQRRQVLLVQVVKEERGNKGAALT
TYLSLAGRYTVLMPNSSHGGGISRKISSASDRKRLKQIVGDLKLPRTMGLIVRTAGLQRT
KTEIKRDFDYLARLWDEIREKTLSSSAPTLIHSDSDLIKRAIRDIYNREIEEVVVEGEAG
YRSAKEFMKLLMPSHARRVKAYSDPVPLFQRYGAEDQLRAMYDPVVQLKSGGYLVINPTE
ALVSIDINSGRSTKEHGIEQTALSTNLEAAKEIARQLRLRDMAGLVVIDFIDMEYNSNNR
KVERALKDALKSDRARIQVGRISGFGLMEMSRQRLRTGVLEATTRECPHCDGTGLVRTAS
SAGLSALRLIEDEAAKGKGTVITLAASTEAAVYLLNSKRDDLVEIERRYGVTVEVVPEGE
EEGAKMSVSSSGPKPAQAPKFEPIVDDEDEPEADEQAEDRDDEDDDNGNRKRKRRRRGGR
GRNKGRNGDEGGDEGGDDRDDDETAGHESTGNGDGDSEGGPASEEDEGKPRKRRRRGGRR
RRGGRDREDGDNAGEGEIETPEAVAERVSEDMAVAPGAEATADAPDQPAGAEEEPKPKKR
TRRKKAEDGEEAAPPAKRKPRAKAKAKDAAAEEPAGDSPAETPAAEAETEEAPKPKRRTR
RKKAEEAQAPAAESAGPAKAEAEAEAEAPAEKPKRTRRRKKADDEPAPQAPPAESREEPT
SAPETADAAAPADESEAETAPAAQEEGKSSSPRRGWWQRTFGQ
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgcgcatgcttatcgatgcgcgccacccggaagaaacgcgggtggcggtgctc
aagggcaaccggatcgaggaatttgatttcgaatccgccgaacatcggcaaatcaagggc
aatatctacctcgccaaggtaacccgggtcgaacccagcctccaggcggccttcgtcgat
ttcggcggcaaccggcacgggttcctcgccttcagcgagatccaccccgactactaccag
atcccgaaggaagaccgcgaacagctcctggccgaagaggccgaggctgccgaggaagaa
gcgcgcctgcgcgccgaggaagaggaacgcggcgacgttccgggcgacgagtacgacgcc
gacgacgagaccggcgaatcgctggtcgaggaattcgccgaggacggggtcgaggaaatc
gacacgtccgagaaggacaaggtcgccacgatcgaggaaggccaggtcgcgaatggcgac
gacgatggcgacgacgacagcgacgacgaggaagaaggcaacggttcgcgccgcggccgc
cggggtcgcggccgccgccagggcaagggccgcgcgcgggccaaggaagtggacgaggtc
cgcgcccggcgccaggcgctgcgccgccgctacaagatccaggacgtgatccagcgccgg
caggtcctgctggtccaggtggtcaaggaagaacgcggcaacaagggtgccgcgctgacg
acctacctcagcctcgccggccgctacaccgtgctgatgcccaatagcagccacggcggc
ggcatctcgcgcaagatttccagcgccagcgatcgcaagcggctgaagcagatcgtcggc
gatctcaagctgccgcgcacgatgggcctgatcgtccgcacggccggcctccagcgcacc
aagaccgagatcaagcgcgacttcgactatctcgcgcgcctgtgggacgagatccgcgag
aagacgctttcctccagcgcccccacgctgatccattcggacagcgacctgatcaagcgg
gcgattcgcgacatctacaaccgcgagatcgaggaagtcgtggtcgagggcgaagccggc
taccgctcggcgaaggagttcatgaagctcctgatgcccagccacgcccggcgggtgaag
gcctattccgacccggtccccctgttccagcgctatggcgcggaggaccagctgcgcgcg
atgtacgacccggtcgtgcagttgaagagcggcggctacctggtcatcaacccgaccgag
gcgctcgtctcgatcgacatcaactccggccgttcgaccaaggaacacgggatcgagcag
acggccctgtccaccaacctcgaagcggccaaggaaatcgcgcgccagctgcgcctgcgc
gacatggccggcctggtggtgatcgacttcattgacatggagtacaactccaacaaccgg
aaggtcgaacgcgcgctgaaagacgcgctgaaaagcgaccgggcgcggatccaggtcggc
cgcatttccggcttcggcctgatggagatgagccggcagcgcctgcgcacgggcgtgctg
gaagcgaccacccgcgaatgcccgcactgcgacggcaccggcctcgtccgcacggcatcg
agcgcgggcctttcggccctgcgcctgatcgaggacgaagcggccaagggcaagggcacg
gtcatcacgctggccgccagcaccgaggcggcggtctacctgctcaattccaagcgcgac
gacctggtcgagatcgagcgccgttacggcgtcaccgtcgaagtcgtgcccgagggtgag
gaggaaggcgcgaagatgagcgtctccagctccgggcccaagccggcgcaggcaccgaag
ttcgaaccgatcgtcgacgacgaggacgagcccgaggccgacgaacaggccgaggaccgc
gacgacgaggacgacgacaacggcaaccgcaagcgcaagcgccgccgccggggtggccgc
ggccgcaacaagggccgcaacggcgacgagggcggcgacgagggcggcgacgacagggac
gacgacgaaaccgccggccacgaatccaccggtaacggggacggcgacagcgaaggcggc
cccgcctcggaagaggacgagggcaagccgcgcaagcgccgccgccggggcggacgccgg
cggcgcggcggccgcgatcgcgaggacggcgataacgccggcgaaggcgagatcgagacg
cccgaagcggtcgccgaacgcgtgagcgaggacatggccgtcgccccgggcgccgaagcg
accgcggacgcgccggaccagccggccggggccgaggaagaacccaagccgaagaagcgc
acgcgccgcaagaaggccgaagacggagaggaggccgctccgccggccaagcgcaagccg
cgtgccaaggcgaaggccaaggacgcggcggcggaagagccggccggcgactcccccgcg
gaaaccccggcggccgaagccgagaccgaggaggctccgaagcccaagcggcgcacccgg
cgcaagaaggccgaggaggcgcaggcacccgcagccgaaagcgctggccccgccaaggcc
gaagccgaagcggaggccgaggcaccggctgaaaagcccaagcgcacgcggcggcgcaag
aaggccgacgatgaaccggccccgcaagccccgcctgcggaaagccgcgaggagccgacc
tccgcgcccgagaccgccgatgccgccgcaccggcagacgagagcgaggccgagaccgcg
cccgccgcgcaggaggaaggcaagtcctcctctccgcgccgcggctggtggcagcgcact
ttcgggcagtaa
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