Prochlorococcus marinus MIT 9313: PMT_1789
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Entry
PMT_1789 CDS
T00143
Name
(GenBank) S1 RNA binding domain:Ribonuclease E and G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pmt
Prochlorococcus marinus MIT 9313
Pathway
pmt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PMT_1789
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmt03019
]
PMT_1789
03009 Ribosome biogenesis [BR:
pmt03009
]
PMT_1789
Enzymes [BR:
pmt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PMT_1789
Messenger RNA biogenesis [BR:
pmt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PMT_1789
Ribosome biogenesis [BR:
pmt03009
]
Prokaryotic type
rRNA processing factors
PMT_1789
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DUF4653
Motif
Other DBs
NCBI-ProteinID:
CAE21964
CyanoBase:
PMT1789
UniProt:
Q7TUN6
LinkDB
All DBs
Position
complement(1886902..1888845)
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AA seq
647 aa
AA seq
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MPQQIVISEQLRIAALLTDERVDELIVAQGRYQIGDVYLGTVENVLPGIDAAFVNIGESE
KNGFIHVTDLGPLRLKKGAAGITELLEPRQQVLVQVMKEPTGSKGPRLTGNLALPGRYLV
LQPHGQGVNISRRINSEGERNRLRALGVLVKPPGAGLLIRTEADGISEDLLIDDLEVLLR
QWEAIQQAADNALPPVLLNRDEDFIHRVLRDHVGPDLVRVVVNDAAAIERVSSFLGQEGP
NVLVEAHNESTELLEHYRVNAAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRS
ANARQTVLWTNCEAAIEIARQLKLRNIGGVIIIDFIDMESRRDQLQLLEHFTAAVRDDAA
RPQIAQLTELGLVELTRKRQGQNIYELFGRACPACGGLGHVAVLPGKDLLQPLAMATGLV
RSAASARAEAQVPGEGGNGRRRRGGRIRSGAVEMPAHTPPSGVANGVESTTSVEPERQEP
SGSSEGVIRRQEPELVAVPMNSGQEEVFAWLGLNPLLLIEPPPENDNFLVRVVRPGEDAE
SVLEEAREQLSASSNRRRRRGRGGARGAGRGAPEASVETPSSNGTEVVVQQAKVVAKNEP
LSVQITPLEVDHSSSSASVETVSSISEPQESEPEDPRRRRRRSSAAG
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgccccagcaaattgtcatctctgagcagctgcgcatcgcagccttgctcacagatgag
cgagtcgatgagttgatcgttgctcagggtcgataccagatcggagatgtctacctcggc
acggtcgagaacgttcttccgggaattgatgccgcttttgtgaatattggggaaagtgag
aaaaatggttttatccatgtcactgatctgggccctctgcgtttgaagaagggtgctgca
gggatcaccgagctgctggagccccgtcagcaggtgttggttcaggtgatgaaggagccc
acagggtctaagggaccaaggcttactggcaacctggcgttgcctggtcgctacttggtg
ctgcagccccatggccagggggtgaacatctctcgccggattaattccgaaggggaacgc
aatcgtttgcgagcacttggcgtactagtgaagccgccgggtgctggcctgttgattcgc
accgaggccgatggcattagtgaagatctgctgattgatgatctggaggttttacttagg
caatgggaagcgatccagcaggcggcagacaatgctctaccaccggtactgctcaatcgc
gatgaagatttcattcatcgcgttttgagagatcacgtcggtccagatcttgtgagagta
gtggtgaatgatgccgctgccattgagcgtgtgagcagtttccttggccaggaagggcca
aatgtattagttgaggcccataacgaatccaccgaacttcttgagcattaccgagtaaat
gctgccatccgcgatgctctcaagcccagggtagatctgccatccggtggctacgtgatc
attgagccgacggaggcactcactgttattgatgtcaattcaggctcgttcactcgttcg
gccaatgctcgtcagacggtgctctggaccaattgtgaggcagctattgagattgcccgc
cagctgaagcttcgcaatattggcggtgtgatcatcatcgacttcatcgacatggagtcg
cgccgtgatcagttgcagttgctggagcatttcacagcagccgttcgcgatgatgctgct
cgtcctcagattgcccagttgactgaactggggctggtggaactcactcgtaagcgtcag
gggcagaacatttatgaattgtttggcagggcttgtcctgcctgtggtggtcttggccat
gtggcggtactacctggcaaagatctgctacagccacttgctatggcgactggattggtg
agatcagcagcctctgctcgagctgaagcgcaggtgccaggtgagggcgggaatggtcgc
cgtaggcgtggtgggcgcattcgttctggtgcggttgagatgcctgcacatacgcctcct
tctggtgtggcgaatggagttgagtcaaccacgtctgttgaacctgagagacaagagcct
tcgggctcgtctgagggtgttattcgtcgccaggaacctgaattggttgctgttccaatg
aattcagggcaggaggaggtttttgcttggcttggattaaaccctttgcttttgattgag
ccacctccagagaatgacaactttctggttcgcgtggttcggcctggagaagatgctgag
tctgtccttgaggaggctcgtgagcagctttcagctagttccaatcggcgtcggcgtcgg
ggacgaggtggtgctcgaggggccggccgtggcgctccggaagccagtgtcgaaacccct
tcatccaatggcacagaggtcgttgtccagcaagccaaggttgtcgcaaagaatgagcct
ctaagtgttcaaatcactcctcttgaggttgatcattcatcgagtagcgcttctgtagaa
accgtttcttcaatttccgagccgcaggaaagtgaacccgaggatccgcgccgccgccgc
cgtcgctcctcagctgcaggctga
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