Pseudomonas putida BIRD-1: PPUBIRD1_3719
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Entry
PPUBIRD1_3719 CDS
T01975
Name
(GenBank) Ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ppb
Pseudomonas putida BIRD-1
Pathway
ppb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PPUBIRD1_3719
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppb03019
]
PPUBIRD1_3719
03009 Ribosome biogenesis [BR:
ppb03009
]
PPUBIRD1_3719
Enzymes [BR:
ppb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PPUBIRD1_3719
Messenger RNA biogenesis [BR:
ppb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PPUBIRD1_3719
Ribosome biogenesis [BR:
ppb03009
]
Prokaryotic type
rRNA processing factors
PPUBIRD1_3719
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ADR61308
LinkDB
All DBs
Position
4167678..4170965
Genome browser
AA seq
1095 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLTVPGDMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIR
QVMPQYASKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREC
LEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHFEVQ
RLRDDNPEVLNNQSSYEIAAAEAEEAPQPTATRTLVRQEAAVKTAPARANAPVPAAAEEP
QAAAPVAPAPSAPEPSLFKGLVKSLVSLFAGKDEPAAAPVVPAAEKPAAERSPRNEERRN
GRQQSRNRNGRRDEERKPREERAERAPREERAPREERAPREERAPREERAPREERAPREE
RAPREERAPRQPREDRRSNRGEERVRELREPLDATPPTEREERQPREERVAREERAPREE
RAPREERAPREERAPREERAPRDERAPREERAPREERAPREERAPREERAPREERAPREE
RAPRPPREERQPRAAEEATEQAAELAEEQLPGEELLQDEQEGTDGERPRRRSRGQRRRSN
RRERQRNANGELIDGSEEEGSEEQPQQHQATELGAELAAGLAVTAAVASSNISSDAEAQA
NQQAERATAEVAAVAETDNSEAAQPVEQVEAVTKAEEASVAPAVEQPVTEPVAAAAATAE
PVVEMAPQPVAENAPAVEPVVVAETVVTETPAEAPAVEAGEIEQAPAVAEVTPVAVQPAP
VVEAQPEVVAEPAPAPAVVEPATVMLANGRAPNDPREVRRRKREAEAAAKAAQEAAAASQ
EPALETADEHKPHHG
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcgactcaacccgaagagttgcgtgtagccctggtggacggccaacgt
ctctacgacctggacatcgagtccggcgcgcgcgagcagaaaaaggccaacatctacaaa
ggcaagatcacccgcatcgaacccagcctcgaagccgccttcgtcgacttcggttccgaa
cgtcacggcttcctgccgctgaaagaaatctcccgcgagtacttcaagaaggccccagaa
ggccgggtcaacatcaaggaagtgctcagcgaaggccaggaagtcatcgttcaggtcgag
aaggaagagcgcggcaacaaaggcgccgccctcaccaccttcatcagcctggccggccgc
tacctggtgctgatgcccaacaacccgcgcgccggtggcatctcgcgccgcatcgaaggc
gaagagcgcaacgaactgcgcgaagccctgaacggcctgaccgtaccgggcgatatgggc
ctgatcgtgcgcactgccggccttggccgcagcagcgaagaaatgcagtgggacctggat
tacctgctgcagctgtggaccgccatcaaggaagcgtccctggaccgcgccgcgccattc
ctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctgcgccaggac
atcggcgaagtgctgatcgacagcatcgacgcccaggaagaagcgctgaccttcatccgc
caggtgatgccgcagtacgccagcaaggtcaagctgtacgaagacagcgtaccgctgttc
aaccgcttccagatcgaaagccagatcgagacggccttccagcgcgtggtcgacctgccg
tccggcggttcgatcgtgatcgacccgaccgaagccctggtgtcgatcgacatcaactcg
gcgcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaacctggaagcg
gccgaggaaatcgcccgccagctgcgcctgcgtgacatcggcggcctgatcgtcatcgac
ttcatcgacatgaccccggcgaagaaccagcgcgccgttgaagagcgcgttcgtgaatgc
ctggaagccgaccgcgcccgcgtgcaggtaggccgcatctcgcgcttcggcctgctggaa
atgtcccgtcagcgcctgcgcccatcgctgggcgaaagcagcggcatcgtctgcccacgc
tgctccggcaccggcatcatccgtgacgtcgaatcgctgtcgctggccatcctgcgcttg
atcgaagaagaagccctgaaggaccgcaccgccgaagtacgtgctcaagtgccgatcccg
gtagccgctttcctgctgaacgaaaagcgtaattcgattaccaagatcgagctgcgcacc
cgtgcgcgcatcatcatcctgccgaacgaccacctggaaaccccgcacttcgaagtccag
cgcctgcgcgacgacaaccctgaagtgctgaacaaccagtccagctacgaaatcgctgcc
gccgaagccgaagaagcgccgcaaccgaccgccacccgcaccctggtacgccaggaagcc
gcagtgaagacggccccggcccgcgccaacgcaccggtaccggccgccgctgaagagccc
caggctgccgctccagtcgcccctgccccgagcgctccggagccaagcctgttcaaaggc
ctggtgaagtcactggtgagcctgttcgccggcaaggacgagcctgccgccgcgccagtg
gttcccgccgccgaaaaaccggctgccgagcgcagcccgcgcaacgaagaacgccgcaac
ggccgccagcaaagccgcaaccgcaacggccgccgcgacgaagaacgcaaaccgcgtgaa
gagcgtgccgagcgcgcaccgcgtgaagagcgtgccccgcgcgaagagcgtgcaccgcgt
gaggaacgtgccccacgtgaagagcgtgcaccgcgtgaggaacgtgccccacgtgaagag
cgtgcaccgcgtgaagaacgtgctccgcgccagccacgcgaagaccgccgtagcaaccgc
ggcgaagagcgcgttcgcgaactgcgcgagccgctggacgctaccccgccaaccgaacgt
gaagagcgccagccgcgtgaagaacgtgtagcccgcgaagagcgagcgccacgtgaagag
cgcgcaccgcgtgaagagcgcgcaccgcgtgaagagcgtgctccacgtgaagaacgcgca
ccgcgtgatgagcgtgccccacgtgaagaacgggcaccgcgtgaagaacgcgcccctcgc
gaagaacgtgccccacgtgaagaacgcgcccctcgcgaagaacgtgctccacgcgaagaa
cgcgccccgcgcccaccacgcgaagagcgccaaccacgcgctgccgaagaagcaaccgaa
caggcagccgaactggccgaagagcaactgccaggcgaagagctgctgcaagacgagcag
gaaggcaccgatggcgagcgcccgcgccgccgctcccgtggccagcgtcgtcgcagcaac
cgtcgtgagcgtcagcgcaatgccaatggcgagctgatcgacggcagtgaagaagaaggc
agcgaagagcagccacaacagcaccaggccaccgagctgggtgccgaactggctgccggc
cttgccgtgacggctgctgtcgcaagcagcaacatcagctccgacgcagaagcccaggcc
aaccagcaggccgagcgcgccaccgctgaagtcgccgccgttgcagaaaccgacaacagc
gaagccgcccaaccggtcgagcaggtcgaagcggtcaccaaagctgaagaagcgtccgtg
gccccagcggtcgagcagccggtcaccgagccagtggccgcagccgcggcaactgccgag
cctgtggtcgaaatggccccgcagcctgtcgctgaaaatgcacctgctgttgagccggtc
gtggttgcagaaaccgtggtcactgaaaccccagcagaagccccagcggtagaagccggt
gaaatcgaacaggccccggccgtggccgaagtcactccggttgccgtacagcctgccccg
gttgtcgaagcccagccagaagtggtggccgagcctgcaccggcacctgcagtggtcgaa
cctgccactgtcatgctggccaacggccgcgcaccgaacgacccacgtgaagtgcgtcgc
cgcaagcgcgaggccgaggctgctgccaaagcggcacaggaagctgctgcagcttcccag
gaaccagccttggaaaccgccgatgagcacaaacctcatcacggctga
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