Pseudomonas putida GB-1: PputGB1_1481
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Entry
PputGB1_1481 CDS
T00650
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ppg
Pseudomonas putida GB-1
Pathway
ppg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PputGB1_1481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppg03019
]
PputGB1_1481
03009 Ribosome biogenesis [BR:
ppg03009
]
PputGB1_1481
Enzymes [BR:
ppg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PputGB1_1481
Messenger RNA biogenesis [BR:
ppg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PputGB1_1481
Ribosome biogenesis [BR:
ppg03009
]
Prokaryotic type
rRNA processing factors
PputGB1_1481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ABY97386
UniProt:
B0KF46
LinkDB
All DBs
Position
complement(1663680..1666940)
Genome browser
AA seq
1086 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLTVPGDMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALT
FIRQVMPQYASKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHF
EVQRLRDDNPEVLNNQSSYEIAAAETEEAPQPTATRTLVRQEAAVKTAPARANAPVPAAA
EEPQAAAPVAPAPSAPEPSLFKGLVKSLVSLFAGKDEPAAAPVVAAEKPAAERSPRNEER
RNGRQQSRNRNGRRDEERKPREERAERAPREERQPREERAPREERAPREERAPREERAPR
EERAPRQPREDRRSNRGEERVRELREPLDATPPAEREERQPREERATREERAPREERAPR
EERAPREERAPREERAPREERAPREERAPREERAPREERAPRPPREERQPRAAEEAAEQA
AELAEEQLPNDELLQDEQEATDGERPRRRSRGQRRRSNRRERQRNANGELIDGEEEGSEE
QPQQHQATELGAELAAGLAVTAAVATSNISTDAEAQANQQAERATAEVATAAETDNSEAA
QPVEQVEKVEQVEAVAKAEEVAVAPAVEQPVSEPVAVVEATAEPVVEIAPQAAVEATPVV
EPAVVAETVAAEAPVEAPAVEAGEIEQAPAVVEAASVAKQPAPVIEAQPEAVAEPAPVVV
EPAAIEAPAAVEPATVMLANGRAPNDPREVRRRKREAEAAAKAAQEAAATEEPALEAADE
HKPHHG
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcgactcaacccgaagagttgcgtgtagccctggtggac
ggccaacgtctctacgacctggacatcgagtccggtgcgcgcgagcagaaaaaggccaac
atctataaaggcaagatcacccgcatcgaacccagcctcgaagccgccttcgtcgacttc
ggctccgaacgtcacggcttcctgccgctgaaagaaatctcccgcgaatacttcaagaag
gcccctgaaggccgggtcaacatcaaggaagtactcagcgaaggccaggaagtcatcgtc
caggtcgagaaggaagagcgcggcaacaaaggcgccgccctcaccaccttcatcagcctg
gctggccgctacctggttctgatgcccaacaacccgcgtgccggcggcatctcccgccgc
atcgaaggcgaagagcgcaacgaactgcgtgaagccctgaacggcctgaccgtgccgggc
gacatgggcctgatcgtgcgcactgcaggcctgggccgcagcagcgaagaaatgcagtgg
gacctcgactacctgctgcagctgtggaccgccatcaaggaagcgtccctggaccgcgcc
gcgccattcctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagcatcgacgcccaggaagaagccctcacc
ttcatccgccaggtgatgccgcagtacgccagcaaggtcaagctgtacgaagacagcgtg
ccgctgttcaaccgtttccagatcgaaagccagatcgagaccgccttccagcgcgtggtc
gacctgccttccggcggctcgatcgtgatcgacccgaccgaagccctggtgtccatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaagaaaccgccttgcagaccaac
ctggaagcggccgaggaaatcgcccgccagctacgcctgcgtgacattggtggcctgatc
gtcatcgacttcatcgacatgaccccggcgaaaaaccaacgcgccgtggaagaacgcgtc
cgcgaatgcctggaagccgaccgcgcccgcgtgcaggttggccgcatctcccgcttcggc
ctgctagaaatgtcccgtcagcgcctgcgcccgtcgctgggcgaaagcagcggcatcgtc
tgcccacgctgctccggcaccggcatcatccgcgatgtcgagtcgctgtcgctggccatc
ctgcgcctgatcgaagaagaagccctgaaggaccgcaccgccgaagtgcgtgcccaggtg
ccgatcccggtggccgcgttcctgctcaacgagaagcgcaactcgatcaccaagatcgaa
ctgcgcacccgtgcgcgcatcatcatcttgccaaacgaccacctggaaaccccgcacttc
gaagtccagcgcctgcgcgacgacaacccggaagtgctgaacaaccagtccagctacgag
atcgccgccgccgaaaccgaagaagcgccgcagccgaccgccacccgcaccctggtacgt
caggaagctgctgtgaaaacggccccggcacgcgccaatgcgccggtaccggccgccgct
gaagagccgcaggctgccgcaccggtcgcccctgccccgagcgctccggagccaagcctg
ttcaagggcctggtgaagtcgctggtcagcctgttcgccggcaaggacgagcctgccgcc
gcaccggtggttgccgccgaaaaaccggccgctgagcgcagcccacgtaacgaagaacgc
cgcaacggccgccagcaaagccgcaaccgcaacggccgccgcgacgaggagcgcaagccg
cgtgaagaacgtgccgagcgcgcaccccgcgaagaacgccagccacgtgaggaacgcgca
ccgcgcgaagagcgtgcaccacgtgaagagcgcgccccacgcgaagaacgtgcgccgcgc
gaagagcgtgcaccacgtcagccacgcgaagaccgccgcagcaaccgtggcgaagagcgc
gtacgcgagctgcgtgagccgctggatgctaccccaccagccgaacgcgaagagcgccag
ccgcgcgaagaacgtgcaacccgcgaagaacgtgctccacgcgaagagcgtgcaccgcgt
gaagagcgtgctccacgtgaagagcgcgcacctcgcgaagagcgtgcccctcgtgaagaa
cgtgctccacgcgaagagcgcgcccctcgcgaagaacgtgctccacgtgaagaacgtgcc
ccgcgcccaccacgcgaagagcgtcagccacgtgccgcagaagaagcggccgaacaggct
gccgagctggccgaagagcaactgccaaacgatgagctgctgcaggacgagcaggaagcc
accgatggcgagcgcccgcgccgccgctcgcgtggtcagcgccgtcgcagcaaccgtcgt
gagcgccagcgcaacgccaatggcgagctgatcgacggcgaagaagaaggcagcgaagag
caaccacaacagcaccaggccaccgagctgggtgccgaactggccgccggcctggcagtg
actgccgctgttgccaccagcaacatcagcaccgacgccgaagcccaggccaaccagcag
gccgagcgcgccaccgctgaagtcgccaccgcagcagaaactgacaacagcgaagccgcc
caacccgtcgagcaggttgaaaaggtagagcaggtcgaagctgtcgccaaggctgaggaa
gtggccgtagcacctgcggtcgagcaaccggtcagcgagccagtggccgtggtcgaggca
accgccgagcctgtggtcgaaatcgctccgcaggccgccgtcgaagcgacacctgttgtc
gagccggccgtggttgccgaaaccgtggctgctgaagcgccagtggaagccccagccgtg
gaagccggtgaaatcgaacaggccccggccgttgtcgaagcggcttcggttgccaagcaa
cccgcaccggtaatcgaagctcagccagaagcagtggccgagcctgcacccgtggtcgtc
gaacctgcagcgatcgaagccccagccgcagtagagccggccaccgtcatgctggcgaac
ggccgcgcgccgaacgacccgcgtgaagtgcgccgtcgcaagcgtgaagccgaggctgcc
gccaaagccgcacaggaagctgccgccaccgaggagccagccctggaagccgccgatgag
cacaagcctcatcacggttga
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