Pandoraea pnomenusa DSM 16536: LV28_09925
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Entry
LV28_09925 CDS
T03411
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ppnm
Pandoraea pnomenusa DSM 16536
Pathway
ppnm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppnm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LV28_09925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppnm03019
]
LV28_09925
03009 Ribosome biogenesis [BR:
ppnm03009
]
LV28_09925
Enzymes [BR:
ppnm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LV28_09925
Messenger RNA biogenesis [BR:
ppnm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LV28_09925
Ribosome biogenesis [BR:
ppnm03009
]
Prokaryotic type
rRNA processing factors
LV28_09925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AIU26818
UniProt:
A0A378YJU3
LinkDB
All DBs
Position
complement(985538..988897)
Genome browser
AA seq
1119 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNY
GEGRHGFLPFKEVARAYFRDGADVRNARIQDALSEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMGQLELPEGMSIIARTAGIGRSAEELQ
WDLNYLLQLWNAIEGAAKNIELPRDSALIYLESSLVIRAIRDYFQPDIGEILIDTEEISE
QARNFMQVVMPDHLNRVKQYRDDVPLFSRFQIEHQIETAYSRQVPLPSGGAIVIDHTEAL
VSIDVNSARATKGADIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREV
EQRVKDALKHDRARVQMGKISRFGLMELSRQRLRPSLSEGTHVTCPRCNGTGHIRDAESS
ALQVLRIIQEEAMKEHTAAIHCQVPVEVAAFLLNEKRQEINKIEARFKVGVLLIPNKHLE
TPHYKLERLRFDDPRLDAPKASYSLAEEAARSLEDDPAGYSKKKEDVRPRQEAAVKGITP
EQPAPTAQPRPEPVAAATPAAAPARSGGFIGFVKRLLGLEPAAAPAPAAAEAPAKPAARA
PRERHERPHQQNRNRRGNARDDKAGKDNAGQPAREGREGREAREGRGEGRGEGRGTRPER
GERADRNERNERNERAERGERGDRQEGRDKRERDDAQRQPAQDVRADEAREPREGRERGS
RRDRNERRERRQTEGAEDQQVAPQRAVVAAAAAPVVADQDALEQDHLTAQVEGAPVNTEE
GEQAGEERRRSRRRGRRGGRREREAGEQQLSADGEHAEGATSETVESAAASTPLPTHEGV
ENAAGEALERAEQAPVAPAAMAPRTEPTPAPAHAERAEVPAAPAAPVATLTEAAPVAVPA
VQAPVISEPVAPVNVTPLPVEQVATAPVVPPVSAPLPVVTPAPAQAEVPAQALTEIAATA
ATASAPSASPATEVAEVAGSAAEPVQAQVETEAPQAAHAAKVVETDKVVEAVEAPAAAAT
VQAVSAAPEAAAAATEVVTQRAAPVAAAPTLKHSELESTLASVGLVWVHTDADKHRAAQE
AAAQVVPAPHVQRERRAPAPLNSGPMEQVETRGTSHHVV
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaacgccacgcagcaggaagaactgcgcgtggcaatcgtcgat
gggcagaaactcatcgacatcgatatcgagacggccggacgcgaacagcgtaaaggcaat
atctacaagggcatcatcacccgtatcgaaccctccctcgaagcctgcttcgtcaactac
ggcgaaggtcgccacggcttccttccgttcaaggaagtggctcgcgcatacttccgcgac
ggtgccgatgtgcgcaatgcgcgcattcaggacgccctctccgaaggtcaggagctcatc
gttcaggtcgaaaaggaagagcgcggcaacaagggcgcagccctgaccacgttcatctcg
ctggccggccgctacctcgtgctgatgccgaacaacccgcgcggcggtggcgtatcgcgc
cgcatcgagggcgaagaccgtcaggaactgcgcgagacgatgggccagctcgagttgccg
gaaggcatgagcatcatcgcccgcaccgcaggcatcggccgctcggccgaagaactgcag
tgggatctgaactacctgctgcaactctggaacgccatcgaaggcgccgccaagaatatc
gagctgccgcgcgactcggcgctgatctatctcgaatcgagcctggtcatccgcgccatc
cgcgactacttccagccggacatcggtgaaatcctcatcgataccgaagaaatctccgaa
caggcgcgcaatttcatgcaggtggtcatgcccgatcacctcaatcgcgtgaaacagtac
cgcgacgacgtgccgctgttctcgcgcttccagatcgaacaccagatcgagacggcatac
tcgcgtcaggtgccgttgccctcgggcggcgccatcgtgatcgaccacaccgaagccctg
gtttcgatcgacgtgaactctgcgcgagccaccaagggcgccgacatcgaggaaacggcc
ctgcgcaccaatctggaagcggccgacgaagtcgcgcgccagttgcgcctgcgcgatctt
ggcggcctgatcgtgatcgacttcatcgacatggagtcggccaagagccagcgtgaagtc
gaacaacgtgtgaaggatgcgctcaagcacgaccgtgcgcgcgtccagatgggcaagatc
tcgcgtttcggcctgatggagctctcgcgccagcgcctgcgtccgtcgctgtccgaaggc
acgcacgtgacctgcccgcgctgcaacggcaccggccatatccgcgacgccgaatcgtcg
gcgcttcaggtcctgcgcatcatccaggaagaagcgatgaaagagcacacggcagccatc
cactgccaggtgccggtcgaggtcgccgcattcctgctcaatgaaaagcgtcaggaaatc
aacaagatcgaagcacgcttcaaggtcggcgtgctgctgatcccgaacaagcatctcgaa
acgccgcactacaagctcgaacgcctgcgcttcgacgatccgcgtctggacgccccgaag
gccagctactcgctcgccgaggaagcggcccgttcgctggaagacgatccggccggctac
agcaagaagaaggaagacgtgcgcccgcgtcaggaagccgccgtcaagggcattacgccc
gagcaaccggcaccgacggcacagccgcgtccggagccggttgctgcggctacgcccgcc
gccgctcccgcccgcagcggtggtttcatcggttttgtgaagcgcctgctgggcctcgag
cccgccgcggcacccgcaccggccgcggctgaagcgccggccaagccggcagcccgtgca
ccgcgcgagcgccatgagcgcccgcatcaacagaaccgaaaccgccgtggcaacgctcgc
gacgacaaggcaggcaaggacaacgccggccagccggcacgtgagggtcgcgaaggacgt
gaagctcgcgagggtcgtggcgagggtcgtggcgagggtcgtggcacccgtccggagcgt
ggcgagcgcgccgaccgcaatgagcgcaacgaacgtaacgagcgcgcggaacgtggcgag
cgtggtgatcgtcaggagggccgtgacaagcgtgagcgcgacgacgctcaacgtcagccg
gctcaggacgtccgcgccgatgaggcccgcgagccgcgcgaaggccgtgagcgcggtagc
cgccgcgaccgcaacgagcgccgcgagcgccgccaaaccgaaggtgcggaagaccagcag
gtcgcaccgcaacgcgccgtcgtcgccgcagcagcagcgccggtcgtcgccgatcaggac
gcgctcgaacaggatcacctgaccgcacaggtcgaaggcgcgccggtcaacaccgaggaa
ggcgagcaagcgggtgaagaacgccgccgcagccgtcgccgtggtcgccgtggcggccgc
cgcgagcgcgaagccggcgagcagcaactgagcgccgacggcgagcacgcagagggcgca
acgtccgaaaccgtggaaagcgccgccgcaagcaccccgctgccgacgcacgaaggcgtg
gaaaacgcggctggcgaagcgctggagcgcgccgagcaagctccggtcgcccccgccgcg
atggcaccccgtaccgaaccgacgcccgccccggcccacgccgagcgcgctgaagtcccg
gcagccccggcagccccggttgcaacgctgaccgaagccgcgccggtggccgtgcccgca
gtgcaggcgccggtgatctcggagccggtcgcaccggtgaacgtgacgccgctgccggtc
gagcaggttgccaccgcgccggtcgtaccgccggtcagcgcgccgctgcccgtggtgacg
ccggcgccggcccaagccgaagtccccgcacaggccttgacggaaatcgcggcgaccgcg
gcgaccgccagcgccccgtcggccagtccggccacggaagtggcagaggtcgccggaagc
gcggcggaacccgtgcaggcccaggtcgagacggaggcgccccaagctgcccacgccgcc
aaggtggtcgaaaccgacaaggtggtggaagccgtggaagcgcccgccgcggccgcaacg
gttcaggccgtgtcggcagcaccggaagcggccgccgccgcgaccgaagtcgtcacacaa
cgcgccgctccggtggccgcggcaccgacgctcaagcacagcgagctggaatccacgctt
gcgagcgtgggcctcgtctgggtgcatacggacgccgacaagcaccgtgcggcgcaggaa
gccgcggcgcaggtcgtcccggccccgcacgtgcagcgtgagcgccgcgcgccggcaccg
ctcaatagcggcccgatggagcaagtggaaacgcgcggcacgtcgcatcacgtggtctga
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