Pandoraea pnomenusa RB38: DA70_20455
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Entry
DA70_20455 CDS
T03067
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ppno
Pandoraea pnomenusa RB38
Pathway
ppno03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppno00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DA70_20455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppno03019
]
DA70_20455
03009 Ribosome biogenesis [BR:
ppno03009
]
DA70_20455
Enzymes [BR:
ppno01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DA70_20455
Messenger RNA biogenesis [BR:
ppno03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DA70_20455
Ribosome biogenesis [BR:
ppno03009
]
Prokaryotic type
rRNA processing factors
DA70_20455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AHN76568
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All DBs
Position
4457742..4461113
Genome browser
AA seq
1123 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNY
GEGRHGFLPFKEVARAYFRDGADVRNARIQDALSEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMGQLELPEGMSIIARTAGIGRSAEELQ
WDLNYLLQLWNAIEGAAKNIELPRDSALIYLESSLVIRAIRDYFQPDIGEILIDTEEISE
QARNFMQVVMPDHLNRVKQYRDDVPLFSRFQIEHQIETAYSRQVPLPSGGAIVIDHTEAL
VSIDVNSARATKGADIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREV
EQRVKDALKHDRARVQMGKISRFGLMELSRQRLRPSLSEGTHVTCPRCNGTGHIRDAESS
ALQVLRIIQEEAMKEHTAAIHCQVPVEVAAFLLNEKRQEINKIEARFKVGVLLIPNKHLE
TPHYKLERLRFDDPRLDAPKASYSLAEEAARSLEDDPAGYSKKKEDVRPRQEAAVKGITP
EQPAPTAQPRPEPVAAATPAAAPARSGGFIGFVKRLLGLEPAAAPAPAAAEAPAKPAARA
PRERHERPHQQNRNRRGNARDDKAGKDNAGQPAREGREGREAREGRGEGRGEGRGEGRGT
RPERGERADRNERNERNERAERGERGDRQEGRDKRERDDAQRQPAQDVRADEAREPREGR
ERGSRRDRNERRERRQTEGAEDQQVAPQRAVVAAAAAPVVADQDALEQDHLTAQVEGAPV
NTEEGEQAGEERRRSRRRGRRGGRREREAGEQQLSADGEHVEGATSETVESAAASTPLPT
HEGVENAAGEALERAEQAPVAPAAMAPRTEPTPAPAHAERAEVPAAPAAPVATLTEAAPV
AVPAVQAPVISEPVAPVNVTPLPVEQVATAPVVPPVSAPLPVVTPAPAQAEVPAQALTEI
AATAATASAPSASPATEVAEVAGSAAEPVQAQVETEAPQAAHAAKVVETDKVVEAVEAPA
AAATVQAVSAAPEAAAAATEVVTQRAAPVAAAPTLKHSELESTLASVGLVWVHTDADKHR
AAQEAAAQVVPAPHVQRERRAPAPLNSGPMEQVETRGTSHHVV
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaacgccacgcagcaggaagaactgcgcgtggcaatcgtcgat
gggcagaaactcatcgacatcgatatcgagacggccggacgcgaacagcgtaaaggcaat
atctacaagggcatcatcacccgtatcgaaccctccctcgaagcctgcttcgtcaactac
ggcgaaggtcgccacggcttccttccgttcaaggaagtggctcgcgcatacttccgcgac
ggtgccgatgtgcgcaatgcgcgcattcaggacgccctctccgaaggtcaggagctcatc
gttcaggtcgaaaaggaagagcgcggcaacaagggcgcagccctgaccacgttcatctcg
ctggccggccgctacctcgtgctgatgccgaacaacccgcgcggcggtggcgtatcgcgc
cgcatcgagggcgaagaccgtcaggaactgcgcgagacgatgggccagctcgagttgccg
gaaggcatgagcatcatcgcccgcaccgcaggcatcggccgctcggccgaagaactgcag
tgggatctgaactacctgctgcaactctggaacgccatcgaaggcgccgccaagaatatc
gagctgccgcgcgactcggcgctgatctatctcgaatcgagcctggtcatccgcgccatc
cgcgactacttccagccggacatcggtgaaatcctcatcgataccgaagaaatctccgaa
caggcgcgcaatttcatgcaggtggtcatgcccgatcacctcaatcgcgtgaaacagtac
cgcgacgacgtgccgctgttctcgcgcttccagatcgaacaccagatcgagacggcatac
tcgcgtcaggtgccgttgccctcgggcggcgccatcgtgatcgaccacaccgaagccctg
gtttcgatcgacgtgaactctgcgcgagccaccaagggcgccgacatcgaggaaacggcc
ctgcgcaccaatctggaagcggccgacgaagtcgcgcgccagttgcgcctgcgcgatctt
ggcggcctgatcgtgatcgacttcatcgacatggagtcggccaagagccagcgtgaagtc
gaacaacgtgtgaaggatgcgctcaagcacgaccgtgcgcgcgtccagatgggcaagatc
tcgcgtttcggcctgatggagctctcgcgccagcgcctgcgtccgtcgctgtccgaaggc
acgcacgtgacctgcccgcgctgcaacggcaccggccatatccgcgacgccgaatcgtcg
gcgcttcaggtcctgcgcatcatccaggaagaagcgatgaaagagcacacggcagccatc
cactgccaggtgccggtcgaggtcgccgcattcctgctcaatgaaaagcgtcaggaaatc
aacaagatcgaagcacgcttcaaggtcggcgtgctgctgatcccgaacaagcatctcgaa
acgccgcactacaagctcgaacgcctgcgcttcgacgatccgcgtctggacgccccgaag
gccagctactcgctcgccgaggaagcggcccgttcgctggaagacgatccggccggctac
agcaagaagaaggaagacgtgcgcccgcgtcaggaagccgccgtcaagggcattacgccc
gagcaaccggcaccgacggcacagccgcgtccggagccggttgctgcggctacgcccgcc
gccgctcccgcccgcagcggtggtttcatcggttttgtgaagcgcctgctgggcctcgag
cccgccgcggcacccgcaccggccgcggctgaagcgccggccaagccggcagcccgtgca
ccgcgcgagcgccatgagcgcccgcatcaacagaaccgaaaccgccgtggcaacgctcgc
gacgacaaggcaggcaaggacaacgccggccagccggcacgtgagggtcgcgaaggacgt
gaagctcgcgagggtcgtggcgagggtcgtggcgagggtcgtggcgagggtcgtggcacc
cgtccggagcgtggcgagcgcgccgaccgcaatgagcgcaacgaacgtaacgagcgcgcg
gaacgtggcgagcgtggtgatcgtcaggagggccgtgacaagcgtgagcgcgacgacgct
caacgtcagccggctcaggacgtccgcgccgatgaggcccgcgagccgcgcgaaggccgt
gagcgcggtagccgccgcgaccgcaacgagcgccgcgagcgccgccaaaccgaaggtgcg
gaagaccagcaggtcgcaccgcaacgcgccgtcgtcgccgcagcagcagcgccggtcgtc
gccgatcaggacgcgctcgaacaggatcacctgaccgcacaggtcgaaggcgcgccggtc
aacaccgaggaaggcgagcaagcgggtgaagaacgccgccgcagccgtcgccgtggtcgc
cgtggcggccgccgcgagcgcgaagccggcgagcagcaactgagcgccgacggcgagcac
gtagagggcgcaacgtccgaaaccgtggaaagcgccgccgcaagcaccccgctgccgacg
cacgaaggcgtggaaaacgcggctggcgaagcgctggagcgcgccgagcaagctccggtc
gcccccgccgcgatggcaccccgtaccgaaccgacgcccgccccggcccacgccgagcgc
gctgaagtcccggcagccccggcagccccggttgcaacgctgaccgaagccgcgccggtg
gccgtgcccgcagtgcaggcgccggtgatctcggagccggtcgcaccggtgaacgtgacg
ccgctgccggtcgagcaggttgccaccgcgccggtcgtaccgccggtcagcgcgccgctg
cccgtggtgacgccggcgccggcccaagccgaagtccccgcacaggccttgacggaaatc
gcggcgaccgcggcgaccgccagcgccccgtcggccagtccggccacggaagtggcagag
gtcgccggaagcgcggcggaacccgtgcaggcccaggtcgagacggaggcgccccaagct
gcccacgccgccaaggtggtcgaaaccgacaaggtggtggaagccgtggaagcgcccgcc
gcggccgcaacggttcaggccgtgtcggcagcaccggaagcggccgccgccgcgaccgaa
gtcgtcacacaacgcgccgctccggtggccgcggcaccgacgctcaagcacagcgagctg
gaatccacgcttgcgagcgtgggcctcgtctgggtgcatacggacgccgacaagcaccgt
gcggcgcaggaagccgcggcgcaggtcgtcccggccccgcacgtgcagcgtgagcgccgc
gcgccggcaccgctcaatagcggcccgatggagcaagtggaaacgcgcggcacgtcgcat
cacgtggtctga
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