Pseudomonas psychrophila: G5J76_09585
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Entry
G5J76_09585 CDS
T06988
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ppsh
Pseudomonas psychrophila
Pathway
ppsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G5J76_09585 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsh03019
]
G5J76_09585 (rne)
03009 Ribosome biogenesis [BR:
ppsh03009
]
G5J76_09585 (rne)
Enzymes [BR:
ppsh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
G5J76_09585 (rne)
Messenger RNA biogenesis [BR:
ppsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G5J76_09585 (rne)
Ribosome biogenesis [BR:
ppsh03009
]
Prokaryotic type
rRNA processing factors
G5J76_09585 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
MIF4G_like
Motif
Other DBs
NCBI-ProteinID:
QIE32488
LinkDB
All DBs
Position
complement(2108020..2111253)
Genome browser
AA seq
1077 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIR
QVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREC
LEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQ
RLRDDSPEAHTNQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPPRTSAPVPTEAV
AAPTAPAPAATISEPSLFKGLVKSLVSLFASKEEPVAPTVVEKPATPERPARNEERRNGR
QQSRNRNGRRDEERKPREERAPREERAAREPREERTTREETPVVAQAPREERAPRPPREE
RAPRAPREDRKPRGEGREERVRELREPLDAAPAVAAAAAAVTEERPARPPREERQPRAPR
EERAPREEHVAAAAEDEEVLSSEEQSQDETQDNAEGDRPRRRSRGQRRRSNRRERQRDAN
GNVIEGSEENSEEGNAQNAPATTLEIAAGLAVTEAVASSVISAPAEAQAHQQAERATEAT
QESAPAETVVAAEAAQEVAVVEAPATQAPAAEATAAVEATVVETSVVEAPAVEAVTPIEA
IKAPEVEVAPVQEAHPEVQVVAEPVVAAPEPVIEAVAQTPVVETPAFEAPAFEKAPEPTK
EVRVVREPIAEPAAVETTPAAQPAAPEVVAVEAVVETVVTAQPTPAEAEVVVATEVVEVV
VAAPAVSAPSNGRAPNDPREVRRRKREEAAAAAAAAAHAPASETAAQEQEHESKPLA
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcaactcaacctgaagagttgcgcgttgcactggtagatggccaacgc
ctctacgacctggacatcgagtcgggcgcacgcgagcagaagaaagccaacatctacaaa
ggccgtattactcgcattgaaccaagccttgaggctgcctttgtcgatttcggctccgag
cgccacggcttcctgcccctcaaagaaatctcccgcgagtacttcaagaaggctcctgaa
ggccgcgtaaacatcaaggacgtcctgagcgaaggccaggaagttatcgtccaggtcgag
aaagaagaacgtggcaacaagggcgcagccctgaccaccttcatcagcctcgccggtcgt
tacctggtgctgatgccgaacaacccgcgtgccggcggcatctcccgtcgcattgaaggt
gaagagcgcaacgaacttcgcgaagcgctgaacggcctgatcgcccctgctgacatgggc
ctgatcgttcgcactgcaggcctgggccgcagcagcgaagaaatgcagtgggacctcgac
tacctgctgcaactgtggaccgccattaaagaagcctcactggatcgctccgcgccattc
ctgatctaccaggaaagcaacgtgatcatccgcgctatccgcgattacctgcgccaggac
atcggcgaagtactgatcgacagcgttgaagcccaggacgaagcactgaccttcatccgc
caggtgatgccgcagtacgccagcaaaatcaaactctacgaagacagcgttccgctgttc
aatcgtttccagatcgaaagccagatcgagaccgccttccagcgcgtcgttgaactgcct
tccggcggctccatcgttatcgacccgaccgaagccctggtgtccatcgacatcaactcg
gcccgcgccactaaaggcagcgatatcgaagaaaccgcactgcaaaccaaccttgaagcg
gctgaagaaatcgcccgtcagttgcgcttgcgcgacatcggcggcctgatcgtcatcgac
ttcatcgacatgacccctgccaaaaaccagcgcgccgtggaagaaaaagtccgcgaatgc
ctggaagcagaccgtgcccgcgtacaagtcggccgtatctcgcgcttcggcctgctggaa
atgtcccgtcagcgtctgcgtccatccctgggcgaaagcagcggcatcgtttgcccacgc
tgtaacggcaccggcatcatccgcgatgttgagtcgctgtcgctggccatcctgcgcctg
atcgaagaagaagccctgaaagaccgtactgccgaagtacgtgcccaggtgccaatcccg
gttgctgcattcctgctcaacgaaaaacgcaactcgatcaccaagatcgaactgcgcacc
cgtgctcgcatcgtcattctgccgaacgaccaccttgagacgccgcacttcgaagttcag
cgcctgcgtgatgacagcccggaagcccacaccaaccagtccagctatgaaattgctgcc
gctgctgccgaagtggaagaagtccagcctgctgctgccacccgcactctggttcgccag
gaagccgccgttaaaactgcaccgccacgcacctcggcaccggttcctaccgaagccgtc
gcagcgccgactgcacctgcacccgccgccaccatctccgagccaagcctgttcaaaggc
ctggtcaagtcgctggtaagcctgttcgcctccaaggaagagcctgttgctccgaccgtg
gttgagaagccggcaacccctgagcgacctgcacgcaacgaagagcgtcgcaacggccgc
cagcaaagccgcaaccgcaacggtcgtcgcgatgaagaacgcaaacctcgcgaagaacgc
gcaccacgtgaagagcgtgctgcccgtgagccgcgtgaagagcgtacaactcgcgaagaa
acaccggttgttgctcaagcacctcgcgaagaacgtgcaccgcgtccacctcgtgaagaa
cgtgctccacgcgcacctcgcgaagaccgcaaacctcgtggcgaaggccgtgaagagcgc
gtacgcgaactgcgcgagcctctggacgcagcgcctgctgttgctgctgcagccgcagcc
gtaaccgaagaacgtccggcccgcccgcctcgtgaagaacgccagcctcgcgcccctcgt
gaagagcgcgctccacgcgaagagcacgtagcagctgctgctgaagacgaagaagtgctg
tccagcgaagagcaatcccaggacgagacacaggacaacgccgaaggcgatcgtccacgt
cgccgctcccgtggtcagcgtcgtcgcagcaatcgtcgtgaacgtcaacgcgatgccaac
ggcaacgtgattgagggctcggaagagaacagcgaagaaggcaacgcccaaaacgctcct
gcaaccacccttgaaatcgctgccggcctggccgtgacagaagcagtagccagctcggta
atcagtgctcctgctgaagctcaggctcaccaacaagcagagcgtgcgactgaagcaact
caggaatcagccccggctgaaaccgtagttgccgctgaagctgcgcaggaagtagctgtt
gtagaagcacctgcgactcaagcacccgctgctgaagcaaccgcagctgtagaagcaact
gttgttgaaacttcggttgtagaagcaccggctgtcgaagcagtaacgccgatcgaagcg
atcaaggcacctgaagttgaagttgcaccggtacaagaagcccaccctgaagtccaggtt
gtcgccgagccggttgtagcagctccagagccagtcatcgaagccgtcgcgcaaactccg
gtcgttgagactccagctttcgaggcgccagctttcgaaaaagcaccggagcctaccaag
gaagtccgcgttgtacgcgagccaattgccgagcctgccgcagttgaaaccactcctgca
gcacaacctgccgctcctgaagtggtggcggttgaagctgtagtcgagaccgtagtcacc
gctcaaccgactccagctgaagctgaagtcgttgtggcgactgaagtggttgaagtcgtg
gttgcagctcctgcagtcagcgctccaagcaatggccgtgcacctaacgacccgcgcgaa
gtacgtcgtcgcaagcgtgaagaggctgcagccgccgctgctgccgccgcccatgcacct
gcaagtgaaaccgcagcccaggaacaggaacacgagtctaaacctctcgcctaa
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