Pieris rapae (cabbage white): 110992677
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Entry
110992677 CDS
T05162
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
prap
Pieris rapae (cabbage white)
Brite
KEGG Orthology (KO) [BR:
prap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
prap03016
]
110992677
Enzymes [BR:
prap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
110992677
Transfer RNA biogenesis [BR:
prap03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
110992677
Prokaryotic type
tRNA splicing ligases
110992677
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF6471
Motif
Other DBs
NCBI-GeneID:
110992677
NCBI-ProteinID:
XP_022114283
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All DBs
Position
7:2803029..2811128
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AA seq
506 aa
AA seq
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MVVRQYNEELKYLEKINAHCWKIKKGFQPNMNVEGVFYVNNTLEKLMLDELRNSCRPGMT
GGFLPGVKQIANVAALPGIVGRSVGLPDVHSGYGFAIGNMAAFDMSNPDSIVSPGGVGFD
INCGVRLLRTNLHEKDVLPIKEQLAQSLFDHIPVGVGSKGIIPMNARDMEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLNADPSKVSLRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KFAAGKMGLERLGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDQIDVNDRQLACARIN
SKEGQDYLKAMAAAANFAWVNRSSMTFLTRQAFAKQFKMAPDDLDMHVIYDVSHNIAKVE
EHIVDGKLRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGSMGTCSYVLTGTHQGM
TETFGSTCHGAGRALSRAKSRRNIDYKDVLNKLENMGISIRVASPKLVMEEAPESYKNVT
DVVNTCHAAGISKKTVKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtggtccgccaatacaacgaggagctcaaatatctggaaaagataaacgcgcattgt
tggaaaattaaaaaaggctttcaacctaatatgaatgttgagggcgtgttttatgtcaat
aatactttagagaaacttatgttagatgagctacgcaactcctgtagacctggaatgacc
ggaggatttttacctggcgtaaaacaaatagccaacgtagctgcattgccgggtattgtt
ggtcgatctgttggtttaccagatgttcattcaggatatggttttgctattggaaacatg
gcagcatttgatatgtccaatccagactctattgtctccccaggaggtgtaggatttgac
attaattgtggagtcaggcttttaagaacaaatctacatgagaaagatgttcttcctatt
aaggagcaattggcccaaagtttatttgatcatattcctgttggagtaggctcaaaagga
atcatccctatgaatgccagagatatggaagaggcgttggaaatgggcatggattggtca
cttagggagggttatgtttgggctgaggataaggagcattgtgaggaatatggaagaatg
ttaaatgctgatccttcgaaagtaagtcttagagcaaagaaaagaggtttgccacaactt
gggactttaggtgctggcaatcattatgctgaaatacaagttgttgatgaaatatatgat
aaatttgctgctggtaaaatgggacttgagcgattaggtcaagtttgtgttatgatacat
tcgggaagtcgaggttttgggcaccaagtagcaactgatgctttggtgcaaatggagaaa
gcaatgaaaagagatcagattgatgttaatgatcgacaactagcatgtgcaagaattaat
tcaaaagaaggtcaggattacctaaaagctatggcagcagcggctaattttgcttgggtc
aatcgcagttccatgacttttctaacaagacaagctttcgccaaacaattcaaaatggct
cctgatgatttagatatgcatgttatttatgatgtttctcacaatattgctaaagtagaa
gagcatatagtagatggaaaattaaggactcttttagttcatagaaagggttccactagg
gcttttccacctcaccatccccttatacctgtagattatcaattaactggccagcctgta
ttaataggtggttctatgggtacatgtagctatgtcctcacaggtactcatcaaggcatg
actgaaacatttggttccacttgccatggagcgggacgagccctttctcgagcaaagtcg
aggcgtaacatagattacaaggatgtattgaacaaactagaaaacatgggaatatcaata
agagttgcatcaccgaaattagtaatggaagaagctcctgaatcatacaaaaatgttaca
gatgttgtcaacacttgccatgcagctgggataagtaaaaagactgtaaaattgcgtcct
atagctgtaataaaggggtag
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