Paenibacillus sabinae: PSAB_03550
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Entry
PSAB_03550 CDS
T03064
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
psab
Paenibacillus sabinae
Brite
KEGG Orthology (KO) [BR:
psab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psab03016
]
PSAB_03550
Enzymes [BR:
psab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PSAB_03550
Transfer RNA biogenesis [BR:
psab03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PSAB_03550
Prokaryotic type
tRNA splicing ligases
PSAB_03550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AHV95646
UniProt:
X4Z7C5
LinkDB
All DBs
Position
800519..801745
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AA seq
408 aa
AA seq
DB search
MAYQNINGVLVWGNPDEGALAQARTCSETGNVVQTLLMADHHKGYSQPIGGVVVYDRQIS
PSGVGYDIACGNKAVRTNLAAGDIKPRLAKIMDEIARRISFGVGRVNQEKVDHDLFDDPD
WDVYKTVGRQEHDKLKTLARDQLGTVGSGNHFVDLFEEAGTGRVWIANHFGSRGFGHKTA
SGFINLAGGREFLAKAPGEKMDQPPVLLDLSSELGDMYYRVMKLAGRYAYAGRDYVMRQV
LAILGTEADLEVHNHHNYAWKETHSGKEVVVVRKGATPSAPGQTGFIGGSMGDISVIVKG
KGSIENREAYYSTVHGAGRIMSRTQAAGKMNWKTRTRSGGQITTEQMLDAVRAFGVELRG
AGTDESPFVYRKLQDVLDAHAETIEVMHVLKPIGVCMAGADEFDPYKD
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggcttatcagaatataaacggcgtacttgtctggggcaaccccgacgagggtgcgctt
gctcaagcgaggacttgttcggaaaccggtaatgtggtccaaacgctgctaatggcggat
catcataaagggtacagtcaaccgatcggcggagttgttgtttatgaccggcaaatctcc
ccttccggcgttggatatgatattgcatgcgggaataaagcggtacgaacaaacttggcc
gccggggacataaagcccagattggcaaagattatggatgagatcgcccggaggatttcc
ttcggggtgggccgtgtcaaccaggaaaaagtcgatcatgacctttttgacgatcccgat
tgggacgtttacaagacagtaggcaggcaggaacacgacaagctgaagacattggcgcgt
gatcagctgggtacggtcggcagcggcaaccattttgttgacttgtttgaggaagccgga
acaggccgtgtgtggatagcaaatcattttgggagtagagggtttgggcacaaaacggcg
agcggctttattaatctggcgggaggtagggagtttctagcgaaagctcccggtgagaag
atggaccagccgcctgtactgcttgatctgagcagcgagcttggcgatatgtattatcgg
gtgatgaagctggctggacgttacgcatatgcgggacgggattatgtgatgaggcaggtc
ttggcgattctcggaacggaagcagaccttgaagtgcataatcatcataactacgcctgg
aaagagacgcacagcgggaaggaagtcgttgtcgtccgtaaaggagcgactccgtccgcg
ccgggccagaccggatttatcggcgggagtatgggggacatatccgttatcgtaaaaggc
aagggcagcatagagaaccgggaggcttactacagcaccgtacatggagccggacggatc
atgagccggacgcaagcggcaggaaaaatgaactggaagactcgcacaagaagcggtggt
caaatcactacggagcaaatgctggacgccgttcgggccttcggtgtagagttgcgcggc
gcaggaacggatgagagtccgtttgtttaccggaagcttcaagatgtgctggatgcgcat
gccgaaacgattgaggttatgcatgtgcttaaaccgattggtgtttgtatggcgggagcg
gatgagtttgatccgtataaggattga
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