Piscirickettsia salmonis: PSLF89_2473
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Entry
PSLF89_2473 CDS
T03982
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psal
Piscirickettsia salmonis
Pathway
psal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSLF89_2473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psal03400
]
PSLF89_2473
Enzymes [BR:
psal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSLF89_2473
DNA repair and recombination proteins [BR:
psal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PSLF89_2473
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_22
ERCC3_RAD25_C
AAA_30
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AKP74146
LinkDB
All DBs
Position
1887750..1891241
Genome browser
AA seq
1163 aa
AA seq
DB search
MKNKQIISSLPQKKGLVKAYGNAAGAATALLIAEALQQHNTGPALIIAEDSLMADQLARE
IPFFQDSQNTNKPNLHYFPDWETLPYDRFSASEGIRSQRLKTLYDLKYQENTHCITSINA
VLHYIAPVDILLKSTLLMHVGDKISLENFRLELAKAGYRHVEQVIEHGEFASRGALLDIF
PMGAQTPFRIDFFDDEVDSIRRFDSETQRSIDKVTQIQLLPAYEHPFDGAAKRLFRNQWR
ERFISGDLNRHLPYQDLSQGYLPAGIEYYLPLFFKETASLFHYLADSTLIITSGNLQKSI
KQYWQELSNRFDQYSHDIEYPLLKPNEICLDESIFFNQLKNFPRLHVQSEPLQESAGRYN
FLTKTLPNIAVNPSLQFPLTNFKTFIQEQTDSSSSDNQRILLCADSIGRKEILLEQLKQH
QLRPHAVASWQDFYTDKDNKDNFAIAVQPLAESVSLPELGITIITESALFGQHTTPQRQH
ARRVIDPDSIIKNLTELKIGGAVVHIDHGIGRYLGLQIIETDGQPAEYLTLEYANEAKLY
VPVTSLQLINRYSGAAESAPALHYLGTEQWSKARRKAIEKARDTAAELLELYAKRKAQSG
FSFPTPDHDYQQFANEFAFEETEDQQKAINHVNADMHNKRPMDRLICGDVGFGKTEVAMR
AAFQAANHGKQVAVLVPTTLLAQQHYQSFSDRFANWPMKIGILSRFQSSKSQDIIKQIEQ
GQIDIIIGTHKLLSEGVQFKQLGLLIIDEEHRFGVRQKERLKKIRHNVDILALTATPIPR
TLNMSMAGIRDMSIIATPPAKRLAVKTFIRERQDSLIREAILREILRGGQVYILHNKVES
IDRIATEIRELVPEAKVYTAHGQMRERELEKTMSDFYHHRFNVLICTTIIETGIDIPSAN
TIIIDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKSMTSDAKKRLEALAAADTLGA
GFILATHDLEIRGAGEILGEGQSGHIQSVGYNLYMEILNRAVSAMKQGKTLNLDDNLTEQ
TEINLNIPALIPDDYIPDVHMRLTLYKRIANAENNQALDHLQVEMIDRFGLLSKPCHTLF
AVTRLKLQAQALGINKIEANATQGRVIFDKEPKINTTALISLIQKQAHIYRLEGADRLKF
KINMADHDQRLTTIENVLKQLTE
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaataaacaaatcatctcttctttaccgcaaaaaaaaggcctcgttaaagcctat
ggcaatgcagctggcgcagcaaccgcgctgctcatcgctgaagccctccaacaacataat
actggccctgcgctaatcattgccgaagatagcttaatggcagatcagctcgcccgtgaa
attccattttttcaagatagccagaacacaaacaaaccaaacctacactatttccccgac
tgggaaaccctaccctatgaccgcttttctgcctcagaaggcattcgctcacagcgatta
aaaacactgtatgacttaaaatatcaagaaaatacgcattgcatcacttctattaatgcc
gttttgcattatattgcgcctgttgatattttattaaaatcaaccttactgatgcatgtt
ggcgataaaatatccctagaaaattttcgcctggaactggcaaaagcaggctatcgtcat
gttgagcaagtcatcgaacatggtgaatttgcctcacgtggcgctttactcgatattttt
ccaatgggtgcacaaaccccctttcgtattgatttttttgatgatgaagtcgatagtatc
cgcagatttgatagtgaaacacaacgctctatcgataaagtgactcagattcaattactg
ccagcctatgaacacccttttgatggtgcagccaagcgattgtttcgcaaccagtggcgc
gagcgttttattagtggtgatttaaaccgccacctcccttatcaagatttaagccaaggt
tacctccccgcgggtatcgaatattatctaccactttttttcaaagaaactgcaagcctg
tttcattatttagcagatagtactctcattattaccagcggcaatttacaaaaatcaatc
aagcaatactggcaggaattatccaatcgctttgaccaatacagccatgatatcgagtat
ccattattaaaacccaatgaaatctgcctagatgaaagtattttttttaaccaattaaaa
aactttccacgcctacatgttcaaagtgagccattacaagaatccgccggacgttataat
tttcttacaaaaacccttcccaatattgcagtcaatccatccttgcaatttccattaaca
aattttaaaacgtttattcaagagcagactgactctagctctagcgacaatcaacgtatt
ttgctctgtgccgatagcatcggccgtaaagagatcttactcgagcaactaaaacaacac
caactaaggccacacgcagttgcctcatggcaagacttttatactgataaagataacaaa
gataactttgcaattgccgtacagccattagcagaaagcgtcagtctacctgagcttggc
attacgatcattaccgaaagtgctttatttggccagcatacgaccccacaacgtcaacac
gctcgtcgcgttattgacccagatagcatcattaaaaaccttaccgaacttaagattggt
ggtgctgttgtccatattgaccatggcatcggccgctacttaggtctacaaatcattgaa
actgatggccaaccagcggagtatttaacactcgagtatgccaatgaggctaaactctat
gtaccagtgacgtctttacagctgattaaccgctatagcggcgcagcagagtcagcgcca
gcgcttcattatttaggtacagagcaatggagcaaggcacgtcgtaaagccatagaaaaa
gcccgtgataccgctgcagagctccttgagctctacgctaaacgtaaagcacaaagtggt
tttagcttccctacacccgatcatgattatcagcaatttgccaatgagttcgcctttgaa
gaaaccgaagatcaacaaaaagccattaatcatgttaatgctgatatgcacaataagcgc
ccaatggatcgcttaatttgtggcgatgtcggttttggtaaaacagaagtcgccatgcgt
gccgcctttcaagccgccaatcatggcaagcaagtcgctgttcttgtcccaaccacccta
cttgctcaacagcactaccagagctttagtgatcgttttgccaactggcccatgaaaatc
ggtatactctcacgttttcaatcctccaaatctcaagatattattaaacaaattgaacaa
ggccaaatcgatattattattggcacacataaattactaagtgaaggcgttcagtttaaa
cagttggggttattaattattgatgaggagcatcgctttggtgttcgtcaaaaagagcgc
ttaaaaaaaatacgccataatgttgatattttagccctcacggcaactccaattccacgg
acactgaatatgtccatggccggtattcgtgatatgtcgattattgcaacacctccagcc
aagcgtttagctgtaaaaacctttattcgtgaacgtcaagatagcctcattcgtgaggcg
attttgcgggaaattctacgtggtggccaggtctatattttacataataaagttgaaagc
attgatcgtattgccactgaaatacgtgagcttgtccctgaagccaaagtctataccgcc
catggacaaatgcgcgaacgtgaacttgaaaaaaccatgagtgatttttatcatcaccgt
tttaatgtgctcatctgtacgaccattattgaaactggcattgatattccctcagcaaat
accattattattgaccgcgccgatcatctgggtcttgctcaattgcaccaattgcggggc
cgcgtcggccgctctcatcatcaggcctatgcttacctacttaccccacacccaaagtca
atgacgagtgatgcgaaaaagcgcttagaagcactcgccgcagccgatacattaggcgct
ggctttattctcgccacccatgatttagagatccgtggtgcgggtgaaattttaggtgaa
ggtcaaagcggccatatccagtctgtaggttataacctctatatggagatacttaatcgc
gcagttagtgccatgaagcaaggaaaaaccttgaatctagatgataatctcacagaacaa
acagaaattaatcttaatattccagcactcatccctgatgattatatccctgatgtccat
atgcgcttaaccctgtacaagcgcattgctaacgctgagaataatcaagcgctcgaccat
ttacaagtggaaatgatcgaccgttttggtctgcttagcaagccttgtcatactcttttt
gctgttacgcgtttaaaattacaagctcaagcacttggcattaacaaaattgaagcgaat
gcaacgcaaggccgtgtaatttttgataaagaaccaaagatcaataccacagcacttatt
tcactcatacaaaagcaggcacatatttatcgcttagaaggtgcagatcgactaaagttt
aaaataaatatggccgatcacgaccagcgtctaacgactattgaaaacgtacttaaacaa
ctgactgaataa
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