Pseudomonas sichuanensis: LOY51_03180
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Entry
LOY51_03180 CDS
T08582
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
psih
Pseudomonas sichuanensis
Brite
KEGG Orthology (KO) [BR:
psih00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psih03016
]
LOY51_03180
Enzymes [BR:
psih01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LOY51_03180
Transfer RNA biogenesis [BR:
psih03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LOY51_03180
Prokaryotic type
tRNA splicing ligases
LOY51_03180
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UVL89926
LinkDB
All DBs
Position
683792..684997
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AA seq
401 aa
AA seq
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MDTLQGAGGKPIKLWTDGVPVEDEARKQLLNTAQMPFIFKHLAVMPDVHLGKGSTIGSVI
PTLGAIIPAAVGVDIGCGMIAARTSLHARDLPDNLHGLRTAIEQAVPHGKTFGRRDQGAW
DNVPRQADQQWQGLAGRFKAITDKYPRLEKTNNRQHLGTLGGGNHFIEVCLDEADRVWFM
LHSGSRGVGNAIGNLFIELAQADMRQHLANLPDKDLAYFEEGSRHFADYVEAVEWAQDFA
RHNRELMMKAVVAATRKVLGKPFEASLEAVNCHHNYVQKEQHFGREVLVTRKGAVSAQKG
QLGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKSRFSVDDQRRATAHVECR
KDKDVIDEIPMAYKDIDAVMLAQRELVEVVHTLRQVVCVKG
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggacaccttgcaaggcgccggcggcaagccgatcaaactgtggaccgacggcgtgccg
gtcgaagacgaggcccgcaaacaattgctcaacacggcgcagatgccgttcatcttcaag
cacctggcggtgatgccggacgtgcacctgggcaagggctcgaccatcggcagcgtgatc
cccaccctaggcgcgatcatcccggcggcggtgggggtggacatcggctgcggcatgatc
gccgcgcggacctcgctgcatgcccgtgacctgccggacaacctgcacggcctgcgtacg
gccatcgagcaggccgtgccccacggcaagaccttcggtcgccgcgaccagggcgcctgg
gacaacgtgcccaggcaagccgaccagcagtggcaaggcctggccgggcgcttcaaggcc
atcaccgacaaatatccacggctggaaaagaccaataaccgccagcacctgggcaccctg
ggcggtggcaaccacttcatcgaggtctgcctggacgaggccgaccgggtctggttcatg
ttgcacagtggctcgcggggcgtcggcaatgccatcggcaacctgttcatcgagctggcc
caggccgacatgcgccagcatctggccaatctgccggacaaggacctggcctatttcgaa
gagggcagccggcatttcgccgactacgtggaggcggtggagtgggcccaggatttcgcc
cggcacaaccgcgagctgatgatgaaggcggtagtggcagccactcgcaaggtgctgggc
aaaccgttcgaggccagcctcgaggcggtcaactgccaccacaactatgtgcagaaggaa
caacacttcggccgtgaagtgctggtgacgcgcaaaggggcggtgtcggcgcagaagggg
cagttgggcatcatcccgggctccatgggcgccaagagtttcatcgtgcgcggcctgggc
aacgaggaatcgttctgctcgtgcagccatggtgcaggccgggtgatgagtcgcaccaag
gccaagagtcgcttcagcgtcgatgaccagcggcgcgccacggcccatgtcgagtgccgc
aaggacaaggacgtgatcgacgagatcccgatggcctacaaggatatcgacgcggtcatg
ctggcccagcgcgagttggtcgaggtggtgcataccctgcgccaggtggtgtgcgtgaaa
ggctga
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