Pedobacter steynii: BFS30_05935
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Entry
BFS30_05935 CDS
T04469
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
psty
Pedobacter steynii
Brite
KEGG Orthology (KO) [BR:
psty00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psty03016
]
BFS30_05935
Enzymes [BR:
psty01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BFS30_05935
Transfer RNA biogenesis [BR:
psty03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BFS30_05935
Prokaryotic type
tRNA splicing ligases
BFS30_05935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AOM76741
UniProt:
A0A1D7QDI8
LinkDB
All DBs
Position
complement(1459958..1461382)
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AA seq
474 aa
AA seq
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MKHILNGNELIERGYAPGKTLGLALSLIEKGFEEFNKEELITLLLEVKAKPEQFIDHEIL
EKLATAIIEEAAAPVDETIALSAQATAYTVYGGDQIEEGARKQMNIAMRLPVSVAGALMP
DAHQGYGLPIGGVLATRNAIIPYGVGVDIGCRMALSVFDISESHFHENEAQFKRELIAHT
KFGAGHGFHGQYKADHEVLERAEFNLTPMIKNLHDKAYSQLGSSGGGNHFVEWGIIEFEK
DDGALNIPKGKYLALLTHSGSRGFGATVAGHYTRLAKELCKLPQEAVNLAYLDMNSEAGQ
EYWLAMNLAGDYASACHEVIHKKLTKAIGAEVLARVENHHNFAWKEVWNGEEVIVHRKGA
TPAGKGVMGIIPGSMTAPGFLVRGKGETAAINSASHGAGRLMSRTKAIQNISRDQMRAIL
KEHKVTLIGAGLDEAPMAYKDINLVMDAQKELVDVVARFSPKIVRMADDGSRED
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgaaacatatattaaatgggaacgaactcattgaaagaggttatgctcccggaaaaaca
ctcggacttgcattaagtctgattgaaaaaggatttgaggaatttaacaaagaagaactc
atcaccttattgctggaagtaaaagcaaaaccagagcagttcatcgatcatgagatcctg
gaaaaactggccacggccatcattgaagaagctgcggcaccagtagatgaaacgattgcg
ttatcggcacaggcaaccgcttataccgtatacgggggagaccagatagaagaaggtgcg
agaaaacagatgaacattgcgatgaggttacctgtaagtgttgcaggcgcattaatgccc
gatgcacatcagggttacggtttgccgataggaggtgttttagctacccgtaatgcaatt
ataccatatggtgtgggtgtcgacatcggttgtcggatggccttatctgtattcgatatt
tcagaaagccatttccatgaaaatgaggctcagttcaaaagagaattgattgcacatact
aaatttggcgccgggcatggttttcatggccagtataaagcagatcatgaagtattggag
cgtgcagagtttaacctgacgccgatgatcaaaaacctgcatgataaggcttattcacag
ctgggaagctctggtggtggaaatcactttgtggaatgggggattattgaatttgagaaa
gacgatggtgctttaaacattccgaagggaaaataccttgccttactgacgcattccggc
tcacgtggatttggggcaacagtagccgggcattataccaggctggctaaagaattatgt
aagcttccacaggaagccgtaaacctggcttatctggatatgaattctgaagccggacaa
gaatactggctggcgatgaaccttgcgggtgattacgcttctgcctgtcatgaggtgatc
cataagaaactaacaaaagccattggagcagaggtgttggccagggtagaaaaccaccat
aattttgcctggaaagaggtctggaacggagaagaagtgattgttcaccgtaaaggggct
acccctgccggtaaaggagtgatggggattattccaggctctatgaccgctccgggtttc
ctggtccgcggaaaaggagagaccgcagcgatcaactctgcttctcatggtgccggaaga
ttgatgagccgaacaaaagccattcagaacatctccagagatcagatgagggctatcttg
aaggaacataaagttaccttaattggcgccggattagatgaagcccctatggcttataaa
gacatcaacctggtgatggatgctcaaaaagagctcgtagacgttgtggccaggtttagt
ccgaaaatcgtccgtatggccgatgacgggagccgggaggattaa
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