Pseudomonas syringae CC1557: N018_18090
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Entry
N018_18090 CDS
T03014
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psyr
Pseudomonas syringae CC1557
Pathway
psyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N018_18090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyr03019
]
N018_18090
03009 Ribosome biogenesis [BR:
psyr03009
]
N018_18090
Enzymes [BR:
psyr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
N018_18090
Messenger RNA biogenesis [BR:
psyr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
N018_18090
Ribosome biogenesis [BR:
psyr03009
]
Prokaryotic type
rRNA processing factors
N018_18090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AHG42018
UniProt:
W0MYC4
LinkDB
All DBs
Position
4021200..4024544
Genome browser
AA seq
1114 aa
AA seq
DB search
MCAERRFRQPGNRRYYMKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKG
RITRIEPSLEAAFVDFGSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEK
EERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGL
IVRTAGLGRSSEEMQWDLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDI
GEVLIDSIEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPS
GGSIVIDPTEALVSIDINSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDF
IDMTPAKNQRAVEEKVRESLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRC
NGTGIIRDVESLSLAILRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTR
ARIIILPNDHLETPHFEVQRLRDDSPEAHNNQTSYEIAAAAAEVEEIAPLAAATRTLVRQ
EAAVKTAPARANAPVPVEAAEPVPTPAPVVPEPSLFKGLVKSLVSLFATKEEPVAPVVVE
KPAAEQRPARNEERRNGRQQSRGRNNRRDEERKPREERAPREERAERAPREERAPREERA
VREPREAREESAPREERPARTSRERKPREAREDRPVRELREPLDAAPAVSLAREERPERA
PREERQPRAPREERQPRAEQAAAAVGEEEEVLLNEEQTQDDNQEINDGNDGNDGDRPRRR
SRGQRRRSNRRERQRDANGNVIEGSEESGNNEEEASADLSAGLGFTAAASAASSVISAPA
EADAHQQAERANSTSSAPDAEPAQQAPAAEAAATEAPVAEEAVTEAPAAQAPVAAQPTVE
APAVEAPVADDAPVAQPAPELEVQPAAVEAPAIAAQSELFEAPHAERVVPFKPTPEPTPE
APVEAAVHEEVPATESSELPTPVPAPAAEPVAVEPAAVKEEPAPYVAPQAAAEEQTPAPQ
EQEPVAAEAPAAPAVSSTGRAPNDPREVRRRKREEEARRQQESSAASAPVAEAAPVAAEA
ESAQPSPASEHKTEDSVIQLQHEAEKETEHKPLI
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
gtgtgtgccgaacgccgtttccggcagcccggaaaccgacggtactacatgaaaagaatg
ctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagacggccagcgcctc
tacgacctggacatcgagtcaggtgcacgcgagcagaagaaggccaacatctataaaggc
cgaatcactcgtatcgaacccagccttgaggctgcctttgtcgatttcggctctgagcgc
cacggttttctgcccctcaaggaaatctcccgcgagtacttcaagaaagcccctgaaggc
cgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgttcaggtcgagaaa
gaagaacgtggcaacaagggcgcagccctgaccaccttcatcagccttgcaggtcgctat
ctggtcctgatgccgaacaacccgcgtgccggtggcatttcgcgtcgaatcgaaggtgaa
gagcgcaacgaactgcgcgaagcactgaacggtctgatcgcccctgccgacatgggtctg
atcgttcgtaccgccggtcttggccgcagcagcgaagaaatgcagtgggacctcgactac
ctgctgcaactgtggaccgccatcaaggaagcgtccctggatcgctccgctcctttcctg
atttaccaggaaagcaacgttatcatccgcgccatccgcgactacctgcgccaggacatc
ggtgaagtcctcatcgacagcatcgaagcccaggaagaagccctgaccttcatccgccag
gtgatgccgcagtacgccagcaagatcaaactgtacgaagacagcgttccgctgttcaat
cgattccagatcgaaagccagatcgaaaccgccttccagcgcgttgtcgaactgccttcc
ggtggctccatcgtcatcgatccgaccgaagcactggtgtccatcgacatcaactcggcg
cgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaaccttgaagcggct
gaggaaatcgcccgtcaactgcgtctgcgtgacatcggcggcctgatcgtcatcgacttc
atcgacatgacgcctgccaagaaccagcgcgccgtggaagagaaagtccgcgaaagcctg
gaagccgaccgcgcccgcgttcaggtcggtcgcatttcgcgcttcggcctgctggaaatg
tcccgtcagcgcctgcgtccatcgctgggcgagagcagcggcatcgtctgcccgcgctgc
aatggcaccggtatcatccgcgatgtcgaatcgctgtcgctggcgatcctgcgcctgatc
gaagaagaagccctgaaagaccgcactgccgaagtgcgcgctcaggtgccgatcccggtt
gctgcgttcctgctcaacgaaaagcgcaattcgatcaccaagatcgaactgcgcactcgc
gcccgcatcatcattctgccgaacgatcatctggaaacgccgcacttcgaagtgcagcgt
ctgcgtgatgacagcccggaagcgcacaacaaccagaccagctacgaaatcgccgctgcg
gctgccgaagtggaagaaattgctccgctggctgctgcaacccgcaccctggttcgtcag
gaagcagccgtcaagaccgcccccgcgcgtgccaatgcgccggttccggttgaagccgca
gagcctgttccgaccccagcacctgtggttcctgagccaagcctgttcaaaggcctggtg
aagtccctggtcagcctgttcgcgaccaaggaagaacctgttgctccggtagtggttgaa
aaacctgccgccgagcagcgtccggcacgcaacgaagaacgccgcaacggtcgccaacag
agccgtggccgcaacaatcgtcgtgacgaagagcgcaagcctcgtgaagagcgtgctcca
cgcgaagaacgtgccgagcgtgcgccgcgtgaagaacgtgcaccccgcgaagaacgcgcc
gtacgtgaaccgcgtgaagcccgtgaagagtcggcaccacgcgaagagcgtccggcacgc
acctcccgtgagcgcaagccgcgtgaagctcgtgaagaccgtccggtccgtgaactgcgt
gagccactggatgccgcacctgcggtgagccttgcccgtgaagaacgtccagagcgcgct
ccgcgtgaagaacgccagccacgtgcccctcgcgaagaacgtcaaccacgtgccgaacag
gccgcggctgccgtgggcgaagaagaggaagtgctgctcaacgaagagcagactcaggac
gacaaccaggaaatcaacgatggcaacgacggtaacgacggcgatcgccctcgtcgccgc
tcccgtggccagcgtcgtcgcagcaaccgccgtgagcgtcaacgtgatgccaacggcaat
gtgatcgaaggctccgaagaaagcggtaataatgaagaagaagccagcgccgatctgtcc
gctggcctgggcttcacagccgccgcctctgccgccagcagcgtgatcagcgcaccagcc
gaagccgatgcgcatcagcaggccgaacgcgccaacagcacttcatccgctccggacgcg
gagcctgcacaacaggccccggctgccgaagcagcagcgaccgaagcgcctgtagctgaa
gaagcagtcactgaagcaccggccgcgcaagcgccagttgctgcacagccgaccgttgaa
gcgcctgccgttgaagccccggtagcagacgatgctccagtagcacagcctgctccagag
ttagaagttcagccggcagcggtggaagcacctgccatcgctgcgcagtccgagctgttc
gaagcaccgcacgcagaacgcgtcgtgccgttcaaaccaacgccagagcctacgccagaa
gcgccggtcgaagctgcggtccatgaagaagtgcctgccaccgaatcgtctgaactgcca
acgcctgtgcctgctcctgcggccgaaccagtagctgtcgagcctgcagcggtgaaagag
gagcctgctccttacgtcgcgcctcaagccgccgctgaagaacagacccctgctccgcaa
gagcaagagccagtagcagcagaagcacccgccgcgccagcggtcagcagcaccggccgc
gctccgaacgatccacgtgaagttcgtcgccgcaagcgtgaagaagaagcacgtcgtcag
caggaatcctctgctgccagcgctccagtcgccgaagcagcaccggttgccgctgaagca
gaatcggcccagccttcaccggcctccgagcacaagactgaagactccgtgattcagttg
cagcatgaagccgagaaagagaccgagcataaacccctcatctaa
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