Parasteatoda tepidariorum (common house spider): 107454342
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Entry
107454342 CDS
T06106
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
ptep
Parasteatoda tepidariorum (common house spider)
Pathway
ptep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107454342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptep03019
]
107454342
Enzymes [BR:
ptep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
107454342
Messenger RNA biogenesis [BR:
ptep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107454342
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
MMR_HSR1
CbiA
nSTAND3
ATP_bind_1
RsgA_GTPase
AAA_14
AAA_29
AAA_16
Motif
Other DBs
NCBI-GeneID:
107454342
NCBI-ProteinID:
XP_015926990
LinkDB
All DBs
Position
Unknown
AA seq
410 aa
AA seq
DB search
MASVSDKIIRLNAFQEVSVSVCSPSEIVSVELIDGSAEIFGVEMIKNAVRTFSSSFAVHT
SSGCSLKFIGAPAGIRTQSTNSVIYDIHKNLQDSRERAFKDGKLGPIVLFTGPTDVGKST
ITRSLLNYAVRCNTQPIFIDLDVGQSSISLPGTVGILPVDCPGDLVKGYCEQKLSVYFFG
HKSPGFNMLLYFELINKLSVTMYNRLEVSPKISSSGTIIDTCGWITGQGYLAILHAARSF
QVSTVFVIEDRELYANLRQELPTATVTFLNKLDGVTVRSKAFRTNKRKELIQEYFYGADR
ILNSYLFEIEYRDFRIIRICNTVNKISQYMYDEPHKYLDIKNVPLDHLMINQILAISYAS
TVEEVITTSVLGFICVKDIDFENRILKVLSPQPGPLPNNLLIAGDIFYET
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggctagtgtgagtgataaaataatcagactcaatgctttccaagaagtcagtgtaagt
gtgtgcagcccatcggaaattgtgtcagttgaacttatagatggtagtgctgaaattttt
ggtgttgaaatgattaaaaatgcagtgagaacattttcttcctcttttgctgtgcatacc
agcagtggttgttctttgaagtttattggtgctccagctggaattagaactcaatccact
aattctgttatctatgacattcacaaaaatcttcaagatagtagggaaagagcatttaag
gatggcaaattagggcctatagtgttatttactggcccaactgatgttggtaaaagtaca
attacccgctcattgttaaactacgctgttcgatgcaatacacagcccatatttatagat
ttagatgttggccaaagctcaatatcgttaccaggcactgtaggtatattgcccgttgac
tgtcctggtgatcttgtcaaaggatattgcgaacagaaactatctgtttacttttttggt
cataagagcccaggttttaatatgttactatactttgagctcattaataaactaagtgtc
accatgtataatcgtttagaagtttcaccgaagatttcttcatcaggtaccattattgat
acgtgtggttggattactggacaaggttatttggcgatacttcatgctgccagatctttc
caggtttcaacagtatttgttatagaagatcgagaactttatgctaatcttagacaagaa
ttgcctacagccacagtaacatttttaaacaaattagatggtgttacagtaagaagtaag
gcatttcgaactaataaaagaaaggagctcattcaggaatatttttatggtgctgacaga
attttaaactcttatttatttgaaatagaatatcgagattttcgcataataaggatatgt
aacactgttaataaaattagccaatatatgtatgatgaacctcataaatatcttgatatt
aaaaatgtcccactggatcatttaatgatcaatcaaattttagctatcagttatgctagt
actgttgaagaagtaattacaacaagtgttttgggatttatctgtgtgaaagatatagat
tttgaaaatcgtatattaaaggttttgtctcctcaacctggacctttgccaaataatctt
ctaatcgcaggtgatattttctatgaaacctag
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