Plasmodium vinckei vinckei: PVVCY_0900510
Help
Entry
PVVCY_0900510 CDS
T08061
Name
(RefSeq) tRNA-splicing ligase RtcB, putative
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pvv
Plasmodium vinckei vinckei
Brite
KEGG Orthology (KO) [BR:
pvv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvv03016
]
PVVCY_0900510
Enzymes [BR:
pvv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PVVCY_0900510
Transfer RNA biogenesis [BR:
pvv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PVVCY_0900510
Prokaryotic type
tRNA splicing ligases
PVVCY_0900510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
RE_Bsp6I
Motif
Other DBs
NCBI-GeneID:
19960946
NCBI-ProteinID:
XP_008624614
UniProt:
A0A449BS21
LinkDB
All DBs
Position
PVVCY_09:180052..181575
Genome browser
AA seq
507 aa
AA seq
DB search
MMKHGKSENVFKYIEKTNETNLYRINKGLVPGMNVEGNMYVNERLKLLIDEEINMYQLNK
CSTFLPAVIQIANVSTLPGIVKASIALPDVHAGYGFSIGNVAAFDMNNEKAVISPGGVGF
DINCGVRLIRTNLFYNDIKDKQEELAQLLFNHIPVGVGSQGFILCNQNNLDDALNLGMDW
SVKEGYSWIEDKLNCEDNGRSLYANSDYVSVRAKKRGITQMGTLGAGNHYAEIQIVDEIY
DKKSAKLMGIEKKNQVCIMIHSGSRGLGHQIATDALIEMEKIMSKYKINVIDKQLACTPI
HSPEGQNYLKAMGAACNFAWINRSSMTFLARQAFSKVFNQSPDDLDMHVIYDVSHNIAKI
EEHFINGKVQNLLVHRKGSTRAFPPFHPLVPLDYQYCGQPILIGGTMGTYSYVLTGTEKA
MENTFGSTCHGAGRALSRNRSRNALSYSDVLTKLKEKNISIRVASPKLIMEEAPESYKNV
SEVVQTCHDSGISNKCFRLKPVAVIKG
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaacatggaaaaagtgaaaatgttttcaaatacattgaaaaaacaaatgagacg
aatctgtacagaataaataaaggacttgttcctggcatgaatgtagaagggaacatgtat
gtaaatgaaagattaaaattattaatagatgaagaaataaatatgtatcaactaaataaa
tgctctacatttcttcctgctgtaatacaaatagctaatgtctcgactcttcctggaatt
gttaaagcctctattgcactacctgatgtacatgcaggttatggattttcaataggcaat
gttgcagcatttgatatgaataatgaaaaagctgttatatccccagggggggtaggtttt
gatataaattgtggagtcagattaattcgaactaatttattttacaatgatattaaagat
aaacaagaagaattagcccaactactttttaatcatataccagtaggtgttgggtctcaa
ggatttattttatgtaatcaaaataatttagatgatgcattaaatttaggtatggattgg
tcagttaaagaaggatattcatggattgaagataaattaaattgtgaagataatggtaga
agtttatatgctaatagtgattatgtatctgttcgagcaaaaaaaagagggattacacaa
atgggcacattaggtgctggcaatcattatgcagaaatacaaattgttgatgaaatttat
gataaaaaaagtgctaaattaatggggattgaaaaaaaaaatcaagtatgcattatgatc
cattcaggcagtagaggattgggacatcaaattgctactgatgcattaatagaaatggaa
aaaattatgagcaaatataaaataaatgtaatagataaacaattagcttgtacacctatt
cattcacctgaaggacaaaactatttaaaagcaatgggagctgcttgtaattttgcatgg
attaatagatcttctatgacatttttagctagacaagctttttcaaaagtatttaatcaa
tcacctgatgatttagatatgcatgtaatatatgatgtttcacataatatagcaaaaatt
gaagaacattttattaatggcaaggtacaaaatttacttgtacatagaaaaggatcaact
agagcatttccaccctttcacccattagtacctttagattatcaatattgtggtcagcca
atattaataggtggcacaatgggaacatattcatatgtattaacaggaactgaaaaagct
atggaaaacacatttggatcgacttgccacggagcaggaagagctttaagtagaaataga
agtagaaatgcattatcatattctgatgtattaactaaattaaaggaaaaaaatatatca
atacgagttgcctcaccaaaattaattatggaagaagcaccagaatcttataaaaatgtt
tcagaggtagttcaaacatgtcatgactcaggaatatctaataagtgctttcgtctaaaa
cctgttgcagtcataaaaggatga
DBGET
integrated database retrieval system
