Pseudoxanthomonas winnipegensis: MWN52_10935
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Entry
MWN52_10935 CDS
T09190
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pwi
Pseudoxanthomonas winnipegensis
Pathway
pwi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pwi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MWN52_10935 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwi03019
]
MWN52_10935 (rne)
03009 Ribosome biogenesis [BR:
pwi03009
]
MWN52_10935 (rne)
Enzymes [BR:
pwi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MWN52_10935 (rne)
Messenger RNA biogenesis [BR:
pwi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MWN52_10935 (rne)
Ribosome biogenesis [BR:
pwi03009
]
Prokaryotic type
rRNA processing factors
MWN52_10935 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
Motif
Other DBs
NCBI-ProteinID:
WJI17621
LinkDB
All DBs
Position
2442764..2446000
Genome browser
AA seq
1078 aa
AA seq
DB search
MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE
RHGFLPLKEISRDYFQSGVDHHKAGLRELLREGQEVVVQVDKDERGNKGAALTTFISLAG
RYMVLMPNSPTAGGVSRRIEGDDRAALKAAMDALTIPDDMGVIIRTAGVGRDAEELQWDL
DYLLSVWKAVAEAALAKPAPFLIYQESRLIVRALRDYLRSDVGEILVDTAELYETAKEFM
QQVMPHNLRKLKHYTDDIPLFNRFQIESQIEAAYERNVRLPSGGSIVVDQTEALTAIDVN
SARATKGGDIEETAFHTNCEAAEEVARQLRLRDLGGLVVIDFIDMSSSKHQREVENRLQN
ALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIR
VAEEHAMKDNTGQVLVQAPLEIANYLLNEKRNALREIEQRHDAPIIIVADEQLHTPHYEV
TRLRENELGEESSKPSYQRGTPRKLPVHALTKAQLNIPAAPAVTTVKHAQPAPIRQEREA
PAPVEPAPAPVAPAPQPVAAATGGVVGWLKRVFGAASAPAPVAAQPQPAREARPARNERG
NTGQQRRNGNEGNRGQGGNNARGGQQNGNGQARRDNREARGNRDGGQAQAGNGQAPRNKG
EGQQNKQPQQQPKAAQNQNPPKQPKPQQDKPQQDAPAQQAQPAQPRAPRPPREPAKPVEA
TPELLAATAVTAGLNAEAPQPVPAATTEPVAEAPKPAPAAPLAVDADAETGDNARDEQDE
LNADGAESGDDNGTPRRRRGRRGGRRRRRGNGEQAAGDAFEQDAAGEEEPVVVPSSSQPE
FDFDDAETPAPAAPAVKPRVRTEAATAAVAAASATAVVAAVAPDSKPSAPAEEPQVASSF
DAPAPTHEVAAPVVEAATPAPATEPVTAEAAPAGPEVHVSVEVQPEPSPVVAEIAPEQLP
VTTPAPTADTSAEAPSEVQAPMASTAPEAELPVQAEVAPPAEEAPATAQATEDETPADAP
TSKPAAASGSLFFATDAQTPRSVTRHLFEPAPAPRVPDEQAPAQNDSHSGTTDSERSA
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atgttgatcaatgccacgcaggcggaagaactgcgcgtggcgatcgtggacgggcagacg
ctgtacgacatcgatatcgagcagccctccaaggaacagaagaagtccaacatctacaag
ggccgcatcacccggctcgaaccctccctggaagcggccttcgtcgactacggcgccgag
cgtcatggcttcctgccgctgaaggaaatctcccgcgactacttccagtccggggtcgac
caccacaaggccggcctgcgcgaactgctgcgcgagggccaggaagtggtggtgcaggtc
gacaaggacgagcgtggcaacaagggcgcggccctgaccacgttcatctccctggccggc
cgctacatggtgctgatgcccaactcgcccaccgccggcggcgtctcgcgccggatcgag
ggcgacgaccgcgccgcgctgaaggcggccatggacgcgctgaccatccccgacgacatg
ggcgtgatcatccgcaccgccggcgtgggccgcgatgccgaagagctgcagtgggacctg
gattacctgctgagcgtgtggaaggccgtggccgaggccgcgctggccaagccggcaccg
ttcctgatctaccaggagtcgcgcctgatcgtgcgcgccctgcgcgactacctgcgctcc
gacgtgggcgagatcctggtcgacaccgccgagctgtacgagacggccaaggaattcatg
cagcaggtgatgccgcacaacctgcgcaagctcaagcactacaccgacgacatcccgctg
ttcaaccgcttccagatcgaatcgcagatcgaggccgcctacgagcgcaacgtgcgcctg
ccctcgggcggttcgatcgtggtcgaccagaccgaggcgctgaccgccatcgacgtcaac
tcggcgcgcgccaccaagggcggcgacatcgaggagaccgcgttccacaccaactgcgaa
gcggccgaggaagtggcccgccagctgcgcctgcgcgacctgggcggcctggtggtgatc
gacttcatcgacatgtcctcctccaagcaccagcgcgaggtcgagaaccgcctgcagaac
gcgctcaagtacgaccgcgcccgcgtccagcttggccgcatctcgcgcttcggcctgatg
gaaatgagccgccagcgcctgcgcccgagcctgggcgaatccagccagatcgtgtgtccg
cgctgcgacggccatggccgcatgcgcagcgtcgagtcgctgtcgctgtcgatcatccgc
gtggccgaagagcacgcgatgaaggacaacaccgggcaggtcctggtgcaggcgccgctg
gagatcgccaactacctgctcaacgagaagcgcaacgcgctgcgcgagatcgaacagcgc
cacgacgcgccgatcatcatcgtcgccgacgagcagctgcataccccgcactacgaagtg
acccgcctgcgcgagaacgagctgggcgaggagtcgagcaagcccagctaccagcgcggt
accccgcgcaagctgccggtgcatgcgctgaccaaggcccagctcaacatccccgccgcc
ccggcggtgactacggtcaagcacgcccagcccgcgccgatccgccaggagcgcgaggcg
ccggctccggtcgaaccggcccccgcgccggtcgccccggcgccgcagccggtcgccgcc
gccaccggcggtgtggtcggctggctcaagcgcgtgttcggcgccgccagcgccccggcg
ccggtcgccgcgcagccgcagccggcgcgcgaggcgcgtccggcccgcaacgagcgcggc
aacaccggtcagcagcgtcgcaacggcaacgaaggcaaccgcggccagggcggcaacaac
gcccgcggcggccagcagaacggcaacggccaggcgcgtcgcgacaaccgcgaggcgcgt
ggcaaccgggacggcggccaggcgcaggccggcaacggtcaggcgccgcgcaacaagggc
gagggccagcagaacaagcagccccagcagcagcccaaggccgcgcagaaccagaacccg
cccaagcagcccaagccccagcaggacaagccgcagcaggacgccccggcgcagcaggcc
cagcccgcgcagccgcgcgcgcccaggccgccgcgcgagccggccaagccggtcgaggcc
acgcccgagctgctggccgccacggccgtgaccgccggcctgaacgccgaggcgccccag
cccgtgccggcagcgacgaccgaaccggtcgccgaagcgcccaagcccgcgccggccgca
ccgctggccgtcgatgccgatgccgagaccggggacaacgcgcgcgacgagcaggacgaa
ctgaacgccgacggcgccgagtccggcgacgacaacggcacgccgcgccgtcgtcgcggc
cgtcgcggtggccgccgccgccgtcgtggcaatggcgagcaggccgctggcgatgcgttc
gagcaggatgccgccggcgaggaagagccggtggtcgtgccgtcgtcctcgcagccggag
ttcgacttcgacgacgccgagacgcccgccccggcggcgccggcggtcaagccgcgcgtg
cgcaccgaggccgccaccgccgcggtcgccgcggccagcgccaccgccgtggtcgccgcc
gtcgcgccggacagcaagccgtcggcgcccgccgaggagccgcaggtcgcgtcgtcgttc
gatgcgccggcgccgacccacgaggtcgccgccccggtcgtcgaagcggcaacgcctgct
ccggcgaccgagccggtgaccgctgaagcggctcccgcaggtcccgaagtgcacgtcagc
gtcgaagtgcagcccgagccgtctccggtcgtggccgagatcgcgcccgagcagcttccg
gtgacgacccccgccccgaccgccgatacttcggcggaggcgccgtccgaggtgcaggcc
cccatggccagcaccgcgcccgaggccgagctgcccgtccaggccgaagtggccccgccc
gccgaggaagccccggcaaccgcgcaggccaccgaggacgagacgccggccgatgccccg
acgtccaagcccgcggcggcctcgggctcgctgttcttcgccaccgacgcgcagaccccg
cgctcggtgacgcgccacctgttcgagccggcgcccgccccgcgcgtgcccgacgaacag
gcgcccgcgcagaacgacagccacagcggcacgaccgacagcgaacgcagcgcctga
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