Methanocella arvoryzae: LRC484
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Entry
LRC484 CDS
T00526
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rci
Methanocella arvoryzae
Brite
KEGG Orthology (KO) [BR:
rci00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rci03016
]
LRC484
Enzymes [BR:
rci01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LRC484
Transfer RNA biogenesis [BR:
rci03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LRC484
Prokaryotic type
tRNA splicing ligases
LRC484
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Mur_ligase
Motif
Other DBs
NCBI-ProteinID:
CAJ35431
UniProt:
Q0W862
LinkDB
All DBs
Position
2818013..2819443
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AA seq
476 aa
AA seq
DB search
MVNLVKVREDIYELPIDSKPGMLVPGRIFLSDLLVKDLEQDAIQQVANVATLPGIQKYSM
AMPDAHVGYGFPIGGVAAFDMENGVISPGGVGFDINCGVRLLRSPLRFEDVQGKTDALID
SLYREVPSGVGSESKFRASEDVLTQVFNHGARWAVENGYGVKADLEHCEENGEMKGADSA
KVSRKARDRGKPQLGTLGSGNHFLEIQHVEKIYDEAAAKAFGLEEGGITVMIHCGSRGAG
HQICTDYVRTLEQASRKYGIKLADRQLACAPLTSKEAQDYFAAMAAGANYAWANRQMISH
WVREAFNKQFHTDLKMDLVYDVAHNVAKYEEHTVDGEKKKLCVHRKGATRAFAPGRPELP
ATYRDIGQPVIIPGSMGSASYVLVGAQGAMEMTFGSTCHGAGRVMSRSAAKKEVHGNEIK
RELAERGIIVKAPSAAAISEEAPEVYKDIDEVVEVVHRLGISRKVARLVPLAVAKG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggttaatttagtcaaggtcagagaagatatctacgaactgccgatagactccaaaccc
ggaatgctggtcccggggaggatattcctgtccgatctgctggtcaaagacctggagcag
gacgcgatccagcaggtggctaacgttgccacgctgcccggtattcagaagtactccatg
gccatgccagacgcccacgtcggctatggcttccccataggtggcgtcgccgcgttcgac
atggaaaatggagtgataagccccggcggggtaggcttcgacatcaactgcggcgtccga
ctattacgtagtccgctgcgattcgaggacgtgcagggcaagactgacgccctcatcgac
agcctctaccgggaagtgccatccggcgtgggctcggagtcgaagttccgggcctccgag
gacgtcctcacccaggtgttcaaccacggcgcccggtgggcggtagagaacggctacggg
gtgaaagccgacctggagcactgcgaggagaacggcgagatgaagggcgccgactcggca
aaagtatcccggaaagcccgggaccggggcaagcctcagctcggcacgctcggcagcggc
aaccacttcctcgagatccagcacgtggagaagatctacgacgaagctgcggcaaaggct
ttcggcctcgaggaaggcggcatcacagtcatgatccactgcggctcccggggtgccggc
caccagatctgcactgactacgtccggacgctcgagcaggcttcccgcaagtacggcatc
aagctcgccgacagacaactggcctgtgccccgctgacctcaaaagaggcacaggactac
tttgcggcgatggccgccggtgccaattacgcctgggcaaaccgccagatgatctcccac
tgggtcagggaagccttcaacaagcaattccacaccgacctgaagatggacctcgtctac
gacgtagcccacaacgtggccaagtacgaagagcacacggtcgacggcgagaagaaaaaa
ctctgcgtccaccgcaaaggcgccaccagggccttcgcacccggcaggccggaactgccc
gccacgtaccgggacatcggccagcccgtgatcatcccgggcagcatgggcagcgcctcc
tacgtcctcgtgggagcgcagggcgccatggagatgaccttcggcagcacctgccacggc
gcaggcagagtcatgagccgctctgccgccaagaaagaggtccacggcaacgagatcaag
cgcgagctcgccgagcggggcatcatcgtcaaggcccccagcgccgcagcgatctccgaa
gaggcccccgaagtttacaaggacatagacgaggtggtcgaagtagtgcacaggctgggt
atctcccgaaaggtcgcccggctcgtgccgctggcagtggccaaaggataa
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