Rhodococcus fascians PBTS 2: A3Q41_04507
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Entry
A3Q41_04507 CDS
T05030
Symbol
rng
Name
(GenBank) Ribonuclease G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rhs
Rhodococcus fascians PBTS 2
Pathway
rhs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3Q41_04507 (rng)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhs03019
]
A3Q41_04507 (rng)
03009 Ribosome biogenesis [BR:
rhs03009
]
A3Q41_04507 (rng)
Enzymes [BR:
rhs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
A3Q41_04507 (rng)
Messenger RNA biogenesis [BR:
rhs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A3Q41_04507 (rng)
Ribosome biogenesis [BR:
rhs03009
]
Prokaryotic type
rRNA processing factors
A3Q41_04507 (rng)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
PCB_OB
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AMY25780
UniProt:
A0A143QRZ6
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All DBs
Position
complement(4734078..4737680)
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AA seq
1200 aa
AA seq
DB search
MADQSPPEDVQSTNAGNPEDTDAVSSAKSDAVSVQPDTIELPTRLRVHALAKILGVTSKQ
LLVTLGELGIEARSAQSSLSRDVAESVRDSVNGPTAPAPDSSAAESPAPDASTDQQPEPA
SVEVPAETAPSVEVPAAEATLFTSAPTAEPEAAQPTATTFATPVFLQPAAAEPAAESADA
PSEAPARRRRSRKAAPKDEAPSDNIAASDNKATDEPATGESPVAENVSTVASDTAAQDTA
VSGAPVSESGASDASSDESGASSAADGSGDDDDQSQPRRRRRGRRGRGRGRGEQSSDDNS
TDDNSTDEDSDDTDSETDSSTSASSADGESTGADESDDSDADETSGDDQPSSSGRRSRRS
RSRGRGSDRQNATTDATTDGSDKQGEDSDDESESGAQDNFGDSDNGDSDNGDSDGDGSSR
RRRRRRRRKTGAEAAAEAAASSEDDPPNTVVHEREPRNKSRAARDEVQGISGSTRLEAKR
QRRRDGRDAGRRRPPILTESEFLARRESVDRVMVVREKATPDHPLTTQVAVLEDGVLVEH
FVTSSATASMVGNVYLGRVQNVLPSMEAAFIDIGRGRNGVLYAGEVNWDAAGLGGSARKI
EQALKPGDQVLVQVSKDPVGHKGARLTTQLSLAGRFLVYVPGGSSTGISRKLPDTERKRL
KEILRDIVPPEAGVIIRTAAEGVSEEELARDVTRLQAQWASIEERSANAETGKGVQPQTL
YEEPDMLVKVIRDLFNEDFSKLVIEGDKAWTTTSNYVETVAPDMMERLQRYEANGSSVDV
FAAHRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGSGGNLEETVTRNNI
EAAEEVVRQMRLRDIGGMIVVDFIDMVLESNRDLVLRRLTEALGRDRTRHQVSEVTSLGL
VQMTRKKLGTGLVEAFSTTCEHCQGRGIIVHPFPIDAKPDSDGGRPSSSRSDSNGSGNGS
RRRRGKDAKSDGNDRSDNTERSTPNGQSGTTDGTDHPVVDPSIKRAHPVALAMAAHHDDV
VADVSPAEVSQAPSGTAGDKDESVTVVSAEDVAVAAAANEDADVAQATVDSAQAHEPVPA
AESAGDGGSANTGATQSSDDTPAQPEPVVATPRRGRRVARKAAAPTSAAPDAGVLMVVSA
TADADDGADAGSAGGDTVADSVPLTAAAEQPVEQVDVPTARPRRRRAAARPAGPPVDIDV
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
gtggccgatcaaagcccgcccgaagatgtacagagcacgaacgcaggaaatccggaggac
accgacgctgtgtcgtccgcgaaatccgacgcggtttccgtgcaacccgacaccatcgaa
ttgccgaccaggctgcgtgtgcatgcactggcgaaaattctgggcgtgaccagcaagcag
ttgctcgtcactctcggtgagctcggcatcgaagcccgcagcgcgcagtcgagtctgagc
cgagacgttgccgagtcggtgcgcgattcggtgaacgggccgaccgcacccgcccccgat
tcctccgcagcggagtcgccggcaccggatgcgtcgacagaccagcagcccgagcccgca
tcggtagaggtgccggccgagacggctccctcggtagaggtccccgctgccgaggcaacg
ctgttcaccagcgcgcccacggccgagcccgaggccgcccaacccacggccacgaccttc
gcgacgccggtgttcctgcagccggcagcggcagagcccgcagcagaatcggcggatgct
ccgtccgaggcccccgcacggcgtcgacgtagccgcaaggccgcacccaaggacgaggca
ccgtccgacaacatcgctgcgtccgacaacaaggccacggacgagcccgcaaccggcgag
tcacccgtcgccgagaacgtctcgacggtcgcctccgacaccgccgcgcaggacaccgct
gtgtccggtgctcccgtgtccgagtccggtgcatcggatgcgtcgtccgacgagtccggg
gcgtcctcggcagcggacggctcgggcgacgacgacgaccagtctcagccccgtcgccgt
cggcgcggtcgccgcggtcgtgggcgtggacgcggagagcagtcgtccgacgacaactcg
accgacgacaactcgaccgacgaggattcggacgacaccgactccgagacggacagcagc
acgtccgcctcttcggcagacggcgagtccaccggagcggacgagtccgacgattccgat
gccgacgagacctccggcgacgaccagccctcgagttcgggacggcgttcgcgtcgctcg
cggtcacgcggccgcgggtccgatcggcagaacgccacgaccgacgccaccaccgacggg
tcggacaagcagggcgaggacagtgacgacgagtccgagtccggcgctcaggacaacttc
ggcgactccgacaacggtgattccgacaacggcgattcggacggagacggctcgagccgt
cgtcgtcggcgccgccgccgtcgtaagaccggagccgaggccgcggcagaagcagctgcg
tcgtccgaggacgacccgcccaacaccgtcgtgcacgaacgcgagccgcgcaacaagagc
cgcgcagcgcgcgacgaggtgcagggcatctccggttcgactcggctcgaggcgaagcgg
cagcgtcgccgtgacggccgcgatgccgggcgacgccgtccgccgattctgaccgaatcg
gaattcctcgctcgtcgtgagtccgtggaccgcgttatggtcgttcgcgagaaggccacc
ccggaccatccgttgaccacgcaggtcgccgtgctcgaagacggcgttctggtggagcac
ttcgtgaccagtagcgccaccgcctcgatggtcggcaacgtctacctgggccgcgtgcag
aacgtcctgcccagtatggaagcagcgttcatcgacatcggccgtggtcgtaacggtgtg
ctgtacgcaggcgaggtcaactgggacgccgccggtctcggcggaagcgcgcgcaagatc
gagcaggccctcaagccgggcgatcaggttctggtgcaggtcagcaaggacccggtgggc
cacaagggcgctcgcttgacgactcagctgtcgttggccggacgcttcctcgtctacgtt
cccggtggcagttccaccggcatcagccgcaagctgcccgacaccgagcgcaagcgactc
aaggaaattctgcgcgacatcgttccccccgaggccggcgtcatcatcaggaccgcggcc
gagggcgtcagcgaggaagaactcgcgcgcgacgtgacgcggctgcaggcccagtgggcc
agcatcgaagagcggtccgcgaacgccgaaacaggcaagggcgtgcagccccagacgctg
tacgaagagcccgacatgctggtgaaggtcattcgcgacctcttcaacgaggacttctcg
aagctcgtcatcgagggtgacaaggcgtggacgaccacgtcgaactacgtggaaaccgtg
gctccggacatgatggagcgcctgcagcgatacgaggccaacggcagctccgtggacgtg
ttcgcagctcaccgcatcgacgaacagctggccaaggccctcgatcgcaaggtgtggttg
ccctcgggcggcacgctggtgatcgatcgcaccgaggcgatgacggtcgtcgacgtcaac
accggaaagttcaccggctccggcggcaacctggaagagaccgtcacccgcaacaacatc
gaggcggccgaggaagtcgttcggcagatgcgtctgcgcgacatcggcggcatgatcgtc
gtcgacttcatcgacatggtgctggaatcgaaccgcgatctggtgctacgccgcctgacc
gaggcgttgggccgtgatcggacccgtcatcaggtgtcggaggtgacctcgctcggtctg
gtgcagatgacgcgcaagaagctcggcacggggttggtcgaggccttctccaccacgtgc
gagcactgccagggtcgcggaatcatcgtgcatccgttcccgatcgacgccaagccggac
tccgacggtggacgcccgagctcgtcacgttcggactcgaacggttcgggcaacggcagc
aggcgtcgacgcggcaaggacgccaagtccgatggaaacgatcggtccgacaacaccgag
cggtcgacgccgaacggacagtcgggcacgacggacgggaccgaccacccggtggtcgac
ccgtcgatcaagcgggcacaccccgtggccctggcgatggcagcgcaccacgacgacgtg
gtcgccgatgtcagccccgcagaggtctcgcaggcaccgtccggcaccgccggcgacaag
gacgagtcggtcaccgtggtctcggcggaggacgtggctgtcgcggcagcggcgaacgag
gacgcggacgtcgcgcaggcaaccgtggacagcgcgcaggctcacgagccggtgccggct
gcagaatccgccggcgacggcggttccgcaaataccggggcaacgcagtcgtccgacgac
acccccgcccagccggagccggtggtggccaccccacgacggggtcgacgggtggctcgg
aaggccgccgcgccgaccagtgctgcgccggatgccggtgtgctgatggtggtttcggcc
acggcagacgccgacgatggtgccgacgcaggttcggccggcggtgacacggtggccgat
tcagtgccgctgacagcggcggcggagcagcctgtcgagcaggtggacgtgccgaccgca
cgtccgcgcaggagacgggcggcggcacgtccggcaggcccgccggtggacatcgatgtg
tag
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