Rhodocaloribacter litoris: GQ464_006420
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Entry
GQ464_006420 CDS
T09819
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rlo
Rhodocaloribacter litoris
Brite
KEGG Orthology (KO) [BR:
rlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rlo03016
]
GQ464_006420
Enzymes [BR:
rlo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GQ464_006420
Transfer RNA biogenesis [BR:
rlo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GQ464_006420
Prokaryotic type
tRNA splicing ligases
GQ464_006420
BRITE hierarchy
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QXD17171
LinkDB
All DBs
Position
complement(1570563..1571996)
Genome browser
AA seq
477 aa
AA seq
DB search
MKIRQLNEYLWEIPKEGGMRVPARIYATKRMMDDIRSDNAPQQAANVAHLPGIVKASLAM
PDIHWGYGFPIGGVAAFDLDEGVISPGGVGYDVNCGVRLMASELRREDVAPRAKALIEEL
FRRVPTGVGVGGAVKVDEKTLRKVAVEGAHWAVKAGYGTEEDLGFIEEGGRIEGADPGAI
SDRAWERGRTQLGTLGSGNHFLEVDYVAEVYDEEAARVLGLFPGQVVVIIHTGSRGFGYQ
TCDDYLAVMDRAMQRYNITLPDRQLACAPLRSSEGKAYLGAMRCAVNFAFANRQIIAHNT
RLAFAEALGLKPGAAGLRTVYEVAHNIAKIEEHEVDGQRLRVCVHRKGATRAFGPGMTEV
PARYRAVGQPVLIPGDMGRYSYVLIGTETAMHETFGSTCHGAGRRMSRRQAKKAARGRNV
ALELEREGIFVRGASLRTIDEEIPEAYKDVADVVDTCALAGISKKVAQLRPIGCIKG
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
ctgaagattcgccagttgaacgagtatctgtgggagatcccgaaggagggcgggatgcgg
gtgccggcccggatctacgccacgaagcggatgatggacgacatccgctccgacaacgcc
ccgcaacaggccgccaacgtggcccatctgcccggcatcgtgaaggcgtcgctggccatg
ccggacatccactggggctacggcttccccatcggcggggtggcggctttcgacctcgat
gaaggggtcatctcgcctggcggcgttgggtacgacgtgaactgcggcgtccggttgatg
gcttcggagctgcgacgggaggacgtggcaccccgggcgaaggcactcatcgaggagctg
tttcgccgcgtgcccaccggcgtgggcgtggggggggccgtcaaggtggacgagaagacg
ctccgcaaggtggccgtcgagggggcgcactgggccgtgaaggccggctacggcacggag
gaggacctcggcttcatcgaggagggcgggcgcatcgagggggccgatcccggcgccatc
tcggaccgggcctgggagcgcggccgcacccagctcggcacgctgggctccggcaaccac
ttcctcgaagtcgactacgtggccgaggtctacgacgaggaggcggcccgggtgctcggc
ctcttccccgggcaggtggtcgtcatcatccacaccggctcgcgcggcttcggctaccag
acgtgcgacgactacctggccgtcatggaccgggccatgcagcggtacaacatcacgttg
ccggaccggcagctggcctgtgccccgctgcgctcctccgaagggaaagcctatctgggc
gcgatgcggtgtgccgtcaacttcgccttcgccaaccggcagatcatcgcccacaacacc
cgtctggcgtttgccgaggcgctggggctgaagcccggggcggcggggctgcggaccgtc
tacgaggtggcgcacaacatcgccaagatcgaggagcacgaggtcgacgggcagcggctg
cgggtgtgcgtgcaccgcaagggggccacgcgggccttcggaccggggatgaccgaggtg
ccggcgcgctaccgggccgtcggccagcccgtgctcatccccggcgacatggggcggtac
tcatacgtgctcatcggcaccgagacggccatgcacgagacgttcggcagcacctgccac
ggggcgggccgccgcatgagccgccgccaggccaagaaggccgcccgcgggcgcaacgtg
gccctcgagctcgaacgcgaggggatcttcgtccgcggcgccagcctccgtaccatcgac
gaggagatccccgaggcctacaaagacgtggccgacgtggtggacacctgcgccctggcc
ggcatctcgaagaaggtggcccagctccgcccgatcggatgcatcaaaggctga
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