Roseimaritima multifibrata: FF011L_08330
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Entry
FF011L_08330 CDS
T07409
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rml
Roseimaritima multifibrata
Brite
KEGG Orthology (KO) [BR:
rml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rml03016
]
FF011L_08330 (rtcB)
Enzymes [BR:
rml01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FF011L_08330 (rtcB)
Transfer RNA biogenesis [BR:
rml03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FF011L_08330 (rtcB)
Prokaryotic type
tRNA splicing ligases
FF011L_08330 (rtcB)
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GFIT
Motif
Pfam:
RtcB
TOH_N
Motif
Other DBs
NCBI-ProteinID:
QDS92097
UniProt:
A0A517MBD9
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Position
1043821..1045293
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AA seq
490 aa
AA seq
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MIPTGEATAILPAGNHHSPVKVFGNEKIRATFDDLCLQQAINSRCAPGVTEVVLNPDAHC
GYGAPIGCVLASPTHIYPGPVGFDIKCSMSLLQTDVPADAMIDKTIRRELIHAVCRRIPT
GMGKGARDVPKSRRVEEKTGVAAMTDGASSDVLAALGVPVAWADRCEDAFHRGHDGSADA
LRQRLYYLRQGKTFSRFRSTVQQLGSYGGGNHFGECEVVDVVDDNESRQIANVFGLRDQH
VAFLSHCGSRGIGHRLASGQFKQLEHKFDQWKIPYPGNDKQLVYAPIGSSEANDYIDDMS
LGANFATVNHLLINALVLEAFQEIIPGTTGNLVYFISHNIARQEIVDNRETWVHRKGATR
AFPAGHHALKRTPFEHTGHPILLPGNPQAGSSVMVGLPGAKESCYSVNHGAGRALGRRRA
IRELDQKQIDASFDSADILSNCRRYPRDEAPAAYKDFEEVLRSVKQAGLAKEVARLRARF
VIKDSSDADD
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgatccctaccggcgaagcgacggcaatcttgcctgctggtaatcatcattcccccgtg
aaggtttttgggaatgagaagatccgtgcgacctttgacgacctttgtttgcagcaagcg
attaattcacgctgtgcgcctggagtgaccgaggtcgttttgaatccggacgctcattgt
ggatatggtgctccgatcggatgcgtgctggcttcgccaacgcacatttacccggggcct
gttggctttgacatcaagtgctcgatgagccttttgcagaccgacgttccggccgatgcg
atgatagataagaccattcgccgcgaattgattcatgcggtttgccggcggattcctacg
gggatggggaaaggggctcgcgatgtgccgaagtcacgccgcgtggaggaaaagaccggc
gttgccgcgatgaccgatggagcctcgtctgatgtcttggcggcgcttggcgttccggtt
gcttgggcggaccgctgtgaagatgccttccatcgcgggcacgacggttccgccgatgcg
cttcggcagcgtctgtactacttgcggcaggggaaaaccttttcccgatttcgttcgacg
gttcagcagttgggctcttacggaggtggtaaccatttcggcgaatgtgaagtggttgat
gttgtggatgacaacgaatctcggcagattgccaacgtttttggattgcgggatcagcat
gttgcgttcctgtcccattgtgggtctcgcgggatcgggcatcgactggcaagcgggcaa
tttaagcaactggagcacaagtttgatcaatggaagattccctacccagggaatgataag
caacttgtttacgcacccatcggatcaagcgaagccaacgactatatcgacgacatgtcg
ctgggggcaaattttgccaccgtcaatcatctgttgattaatgcattggtgctggaggcg
ttccaggagatcattccgggaaccactggtaacctggtctatttcatcagtcacaacatt
gcccgtcaggagatcgtcgataaccgtgaaacatgggttcatcgcaaaggggcgacacgc
gcattcccggctggtcatcatgcccttaagcgaactccgtttgagcataccggtcatccg
attctgttgccgggaaatccgcaagcgggctcgagtgtgatggttgggttgcctggtgcg
aaagagagttgttacagcgtgaaccatggtgcaggacgagccttggggcgacgtcgagcg
attcgtgaactggatcagaagcagattgacgcatcgtttgattccgccgacatcctttcg
aactgccgtcgttatccacgcgacgaagctcccgcggcttacaaagattttgaagaggtg
cttcgcagtgtcaaacaagcggggcttgcgaaagaggtcgctcggttgagagcacggttt
gtgattaaagactcttcggatgcggatgactaa
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