Rhodococcus opacus PD630: Pd630_LPD05424
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Entry
Pd630_LPD05424 CDS
T03071
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
roa
Rhodococcus opacus PD630
Pathway
roa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
roa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pd630_LPD05424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
roa03019
]
Pd630_LPD05424
03009 Ribosome biogenesis [BR:
roa03009
]
Pd630_LPD05424
Enzymes [BR:
roa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Pd630_LPD05424
Messenger RNA biogenesis [BR:
roa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pd630_LPD05424
Ribosome biogenesis [BR:
roa03009
]
Prokaryotic type
rRNA processing factors
Pd630_LPD05424
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
PCB_OB
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AHK32627
LinkDB
All DBs
Position
complement(5597829..5601041)
Genome browser
AA seq
1070 aa
AA seq
DB search
MADQAPPTNSEPNETATAGSAVPALPEKIRVHALAKLLGVTSKQVLAEAAALGTELRSAQ
SSLQRDVAERVHAAFTAAQNAPTEAPAAAEPVAETPAAEPVAESPAVEPAVEVAPEPVSA
AVVEESAAEQVAAPAAPTAEAPAEETPAQEPVAEEAAVSERDLGRDLFTTASYQVEAPAA
EPAAETPPAVSQVPLFLQPDLAAVETPPRRRRSRRDAGTPEPTTEQPPVAESREEVPEPA
KATDTGTAETESDESDVDGDQPRRRRRGRRGRGRGRGEQQNEQDTDTEGAEAEESAHEER
EEKVAETPAREPEEKPKKDSEEKPAEAEQAEAESGDEEAGEGDSDGSSRRRRRRRRRKSG
GEGSGEATSEDDPPNTVVHEREPRNKSRSKDEVQGITGSTRLEAKRQRRRDGRDAGRRRP
PILTESEFLARREAVDRVMVVRDRIATGQPHATTQVAVLEDGVLVEHFVTTSASASMVGN
VYLGRVQNVLPSMEAAFIDIGRGRNGVLYAGEVNWEAAGLGGNSRKIEQALKPGDQVLVQ
VSKDPVGHKGARLTTQISLAGRFLVYVPGGTSTGISRKLPDTERKRLKDILRDIVPSDAG
VIIRTASEGVSEEELARDVKRLQDQWAGIEAQAAKAESGKSGNPQALYEEPDLLVKVIRD
LFNEDFSQLVIEGEKAWSTVESYIKSVAPDLMPRLEQHTSDNGVDVFVAHRIDEQLAKAL
DRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGAGGNLEETVTRNNLEAAEEIVRQMRLRD
IGGMIVVDFIDMVLESNRDLVLRRLTEALGRDRTRHQVSEVTSLGLVQMTRKKLGTGLVE
AFSTTCEHCHGRGIIVHAEPIEVKTSEDNGARGGRPAAATPVARARSGDATSRPAGRPRS
LCTRKPRRWTPPSSGPTRLLSRWHTTITRRRPRTHTAGTRRNPPSSPRRRFPSPSSRSPW
RRRRRRLTCPASKKPWPRPRPRSPRRPSWHPRRRKPPSRKLSPRKPWPTSWSSKLRRPKR
LRSPRPWNPSWSASPSPNRSRWPRSGAGAVGCRGQRQRRCPKPRAPGPCS
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
gtggccgatcaagcgccgcccacaaattcagagccgaacgaaacggccaccgccgggagc
gcggttcccgctcttccggagaagattcgcgttcacgccctcgcgaagttgctgggcgtg
acgagcaagcaggttctcgccgaggctgcggccctcggaaccgaactgcgcagcgcgcag
tcgagcctgcaacgcgacgtcgccgagcgtgtgcacgcggccttcaccgccgcgcagaac
gctcccaccgaggcacccgctgcggccgaaccggtcgcggagaccccggccgccgaaccg
gtcgcggagagcccggccgtcgaaccggccgtcgaggtcgcgccggaaccggtctcggcc
gcggtcgtcgaggaatcggcggccgagcaggttgcggcccctgcggctcccaccgcggaa
gctccggccgaggaaactcccgcccaggagccggtcgcggaggaggctgcggtttccgag
cgcgacctcggacgtgacctgttcaccaccgcgtcctaccaggtcgaggcgcccgccgcc
gagcccgccgcggagaccccgcccgccgtctctcaggtcccgctcttcctgcagcccgac
ctcgcggcggtcgagaccccgccgcgtcgccggcgcagtcgccgggacgccgggaccccg
gaacccaccaccgagcagccgcccgtcgccgaatcgcgcgaggaggtgcccgagcccgcg
aaggccacggacaccggaaccgccgagaccgagtcggacgagtccgatgtcgacggcgat
cagccgcgtcgtcgtcgtcgcggccgtcgcggccgtggtcgcggacggggcgaacagcag
aacgagcaggacaccgacaccgagggtgccgaggccgaggaatccgcgcacgaggagcgc
gaggagaaggtcgccgagacaccggcgcgggagcccgaagagaagccgaagaaggattcc
gaggagaagcccgcggaggccgagcaggccgaagcggagtccggtgacgaagaggccggt
gagggtgactccgacgggtcgagccgtcgccgtcgccgtcgtcgccgtcgcaagtccggt
ggcgaggggtcgggagaggccacgtccgaggacgatccgccgaacaccgtcgtccacgag
cgtgaacctcgcaacaagagccgctcgaaggacgaggtccagggcatcaccggttcgaca
cggctcgaggcgaagcgtcagcgtcgccgcgacggccgcgatgccggccgccggcgtccg
ccgatcctcacggaatcggagttcctggcccgccgcgaggcagtcgaccgcgtgatggtg
gtgcgcgaccgcatcgccaccgggcaaccgcacgcgacgacccaggtcgccgttctcgag
gacggtgtcctcgtcgaacacttcgtgaccacgtcggcgtcggcctcgatggtcggcaac
gtgtacctcggacgcgtccagaacgtgctgcccagcatggaagccgcgttcatcgacatc
ggccgcggccgcaacggcgtgctgtacgcgggtgaggtcaactgggaggccgccgggctc
ggtggcaactcccgcaagatcgagcaggctctcaagccgggcgaccaggtgctggtccag
gtcagcaaggacccggtcgggcacaagggtgcgcggctgaccacgcagatcagtctcgcg
ggccgcttcctcgtgtacgtgccgggcggcacgtccaccggcatcagccgcaaactgccc
gacacggagcgcaagcgcctcaaggacatcctgcgcgacatcgtgccctcggacgccgga
gtcatcatccgaaccgcgtcggagggtgtgagcgaggaggaacttgctcgcgacgtgaag
cgtctgcaggaccagtgggccgggatcgaagcgcaggccgcgaaggcggaatccggcaag
tccggtaacccgcaggccctgtacgaggagcccgaccttctcgtgaaggtcattcgcgac
ctgttcaacgaggacttctcccaactcgtgatcgagggcgagaaggcctggtcgacggtc
gagtcgtacatcaagtccgtggcccccgatctcatgccgaggctcgagcagcacacgtcg
gacaacggtgtcgacgtcttcgtggcgcaccgcatcgacgagcagctggcgaaggcgctc
gaccgcaaggtctggttgccgtccggcggcacgctcgtgatcgaccgcaccgaggccatg
accgtggtcgatgtcaacaccggcaagttcaccggtgccggcggaaacctcgaggagacc
gtcacccggaacaacctcgaggcggccgaggagatcgtccggcagatgcgcctgcgcgac
atcggcggcatgatcgtcgtcgacttcatcgacatggtgctcgaatcgaaccgcgacctc
gtgttgcgacggctgacggaggccctgggccgggatcgcacccgccaccaggtgtccgag
gtcacgtcgctcggcctggttcagatgacgcggaagaagctgggcaccgggctggtcgag
gcgttctcgacgacttgcgagcactgccacggccggggcatcatcgtccacgccgagccg
atcgaggtgaagacctccgaggacaacggtgcgcgcggggggcgtcccgcggcggcgact
ccggtggctcgcgcaagaagcggggacgcgacaagtcgtccggcggggagacctcgcagc
ctgtgcacgaggaagccccgacggtggacgccaccgtcaagcgggcccacccggttgctc
tcgcgatggcacaccaccatcacgaggaggaggccgcgcacgcacacagcgggcacgagg
cggaatccgccgagcagcccgcggcggcggttcccgagcccgagcagccggtcgccgtgg
agacggagacgccggcggctgacctgcccggcatcgaagaagccgtggccgaggccccgg
ccgcggtcgccgcggaggccgtcgtggcacccgaggcggaggaagccgccgtcgaggaag
ctgtcgccgcggaagccgtggccgacgagctggtcgtcgaagctgcgccggccgaagcgg
ctccggtcgccgagaccctggaacccgtcgtggagcgcgagcccgagccccaaccggagc
cggtggccccgcagcggcgcaggagccgtcgggtgtcgagggcagcggcagcgccggtgt
ccgaaaccccgagcgccgggaccgtgttcgtga
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