Rosistilla oblonga: CA51_14170
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Entry
CA51_14170 CDS
T06941
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rol
Rosistilla oblonga
Pathway
rol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CA51_14170 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rol03019
]
CA51_14170 (rne)
03009 Ribosome biogenesis [BR:
rol03009
]
CA51_14170 (rne)
Enzymes [BR:
rol01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CA51_14170 (rne)
Messenger RNA biogenesis [BR:
rol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CA51_14170 (rne)
Ribosome biogenesis [BR:
rol03009
]
Prokaryotic type
rRNA processing factors
CA51_14170 (rne)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
IMS_C
Motif
Other DBs
NCBI-ProteinID:
QDV11547
LinkDB
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Position
complement(1919561..1921162)
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AA seq
533 aa
AA seq
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MKKEMLINVAQPEESRIAILEDGQLEELYTERASADNYVGNIYRGKIVNLEPSIQAAFVD
FGVGRNGFLHISDVEPQYFRQGGYDPEEIMRESDELAEQAAKRAREQGRNQRVFKGGRPR
VKPPIQDVLKRGDSILVQCIKEGIGTKGPTLSTYISIPGRFLVLMPALARVGVSRKIEDD
DDRKRLKKALLELSPPKGLGFIVRTAGAGRTKQDLSRDLAYLLRLWKAIHRRLTESEQPG
VIYEESDMIIRTIRDMLTSDIDAIQIDERGAYERAKDFIRLVMPRAAEQLKFYEGTEPLF
HHYKLESEIRKIQGRTVPLPKGGSIVIDPTEALVAIDVNSGSHRSDSNAEENALQVNLAA
AREIARQLRLRDLGGVIVNDFIDMRKESHRRKVERALHDAMARDRARTKILRTSPFGLVE
MTRQRIRPSLKRSVYKDCPCCSGRGVVKTGESMSIEVIRMLALASRNEHIQRITVRVNDE
VAAYLNNKKRREIMHMEEAGEMTVQILGSEGLFPEHMEMDCRDKHGESVEVDS
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaggaaatgcttatcaacgttgcccagcccgaagagagtcgcatcgcgattctc
gaggatggccagcttgaagagctctataccgagcgtgcaagtgccgacaactatgttggc
aacatctatcgaggcaagatcgttaacctcgaacctagcatccaagccgccttcgtcgac
ttcggcgtcggacgcaacggcttcctgcacatcagcgacgtcgaaccgcagtactttcga
cagggtggttacgaccccgaagagatcatgcgggaatcggacgaactggccgaacaagcg
gccaagcgagcccgcgaacaaggccgcaaccaacgcgtcttcaaagggggccgacctcgc
gttaaacctccgatccaagatgttctgaaacgcggcgacagcattctcgtccagtgcatc
aaagagggcatcggcaccaaaggaccaaccctttcgacttacatcagcatccccggtcgc
ttcctcgtcttgatgccagccttggctcgcgttggcgtcagccgcaagatcgaagacgac
gacgatcgcaaacgattgaagaaagctctgctggaactcagccctcccaagggtctcggt
ttcatcgttcgcaccgccggtgccggacgaaccaagcaggacttgtcgcgcgatctcgcc
tacctgctgcgtctttggaaagcgatccaccgtcgcttgaccgagagcgagcagccgggc
gtgatctacgaagaaagcgacatgatcatccgcacgatccgcgatatgctgaccagcgat
atcgatgcgatccaaatcgatgaacgcggagcgtacgaacgggcgaaggacttcatccgc
ttggtgatgccacgtgccgccgaacagctgaagttctacgaaggcaccgaaccgctgttc
catcactacaagttggaatcggagatccgcaagatccaaggccgcaccgtgccattgccc
aagggcggttcgatcgtgatcgatccgaccgaagctttggttgcgatcgacgtcaacagc
ggcagccaccgcagcgacagcaacgccgaagagaacgcgttgcaagtcaacttggccgcc
gcccgcgagatcgctcgccaattgcgacttcgcgatcttgggggcgtgatcgtcaacgac
ttcatcgacatgcggaaggagagccatcgccgtaaggtcgaacgcgctctgcacgatgcg
atggctcgcgatcgggctcgcaccaagatcttgcgaaccagccccttcggtctggtcgaa
atgactcgtcaacgaattcgtccaagcctaaagcgcagcgtctacaaagactgcccgtgc
tgcagcggccgcggtgtggtcaagactggcgagagcatgtcgatcgaagtcatccggatg
ctggcactggcgtcgcgaaacgagcacattcaacggatcaccgtccgcgtgaacgatgaa
gtcgcagcgtatctgaacaacaagaaacgtcgcgagatcatgcacatggaagaagccggc
gagatgacggttcagatccttggcagcgagggcttgttccccgagcacatggaaatggac
tgccgcgacaaacacggcgaatcggtcgaagtcgacagctga
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