Ralstonia pseudosolanacearum FQY_4: F504_241
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Entry
F504_241 CDS
T02751
Name
(GenBank) RNA-2',3'-PO4:RNA-5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rse
Ralstonia pseudosolanacearum FQY_4
Brite
KEGG Orthology (KO) [BR:
rse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rse03016
]
F504_241
Enzymes [BR:
rse01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
F504_241
Transfer RNA biogenesis [BR:
rse03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
F504_241
Prokaryotic type
tRNA splicing ligases
F504_241
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AGH82763
LinkDB
All DBs
Position
251390..252610
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AA seq
406 aa
AA seq
DB search
MSNTSYDTLHVDHGADIKLWTHGVPVEDDARKQLMNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTRGAIIPAAVGVDIGCGMMAARTTLTAADLPDNLHGLRSAIEAAVPHGRTPGAR
DKGAWSTPPATVDAMWAELAEGFQRITDKYPRLRKTNNHKHLGTLGTGNHFIEVCLDEEN
RVWFMLHSGSRGVGNAIGNLFIELAQADMRQHIANLPDRDLAYFEEGSEHFDDYVEAVGW
AQDYARRNRATMMQNVIAAARKVIAKPFAADVEAVNCHHNYVQRETHFGHEVLVTRKGAV
SAQKGQLGIIPGSMGAKSFIVRGLGNEEAFCSCSHGAGRTMSRTQAKKRYTVDDQVRATA
HVECRKDADVIDEIPMAYKDIDAVMAAQADLVEIVHTLRQVVCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgagcaataccagttacgacaccctccacgtcgatcacggcgccgacatcaagctgtgg
acccacggcgtgccggtggaagacgacgcccgcaagcaactgatgaacacggcgaagatg
cccttcatcttcaagcacctggcggtgatgccggacgtgcacctgggcaaggggtcgacc
atcggcagcgtgatcccgacgcggggcgcgatcatcccggcggccgtcggcgtggatatc
ggctgcggcatgatggccgcgcgcaccacgctcaccgcggccgacctgccggacaacctg
cacggcctgcgcagcgccatcgaggcggcggtgccgcacggccgtacgccgggcgcgcgc
gacaagggggcctggagcacgccgccggccacggtcgatgcgatgtgggcggaactggcc
gagggcttccagcggatcaccgacaagtatccgcggctcaggaagacgaacaaccacaag
cacctcggaacgctcggtaccggcaaccacttcatcgaggtctgcctggatgaagagaac
cgcgtctggttcatgctgcactccggttcgcgcggcgtgggcaatgcgatcggcaacctg
ttcattgaactggcgcaggccgatatgcggcagcatatcgccaacctgccggaccgcgac
ctggcgtatttcgaggaaggcagcgagcactttgacgactacgtggaggcggtgggctgg
gcgcaggactacgcgcgccgcaaccgcgccacgatgatgcagaacgtgatcgcggccgcg
cgcaaggtgatcgccaagccgttcgcggcggacgtcgaggcggtgaactgccaccacaac
tacgtgcagcgcgagacccacttcggccacgaggtgttggtgacgcgcaagggcgcggtg
tcggcacagaaggggcagctcggcatcattccgggttcgatgggcgccaagagcttcatc
gtgcgcgggctgggcaacgaagaagcgttctgctcgtgcagccacggcgcgggccgcacc
atgagccgcacgcaggccaagaagcgctacacggtggatgaccaggttcgtgccaccgcg
cacgtggagtgccgcaaggatgccgacgtcatcgacgaaatcccgatggcgtacaaggac
atcgacgccgtgatggccgcgcaggcggacctggtggagatcgtccatacgctgcggcag
gtggtgtgcgtgaaggggtag
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