Roseivirga spongicola: T7867_12175
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Entry
T7867_12175 CDS
T09626
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rsr
Roseivirga spongicola
Brite
KEGG Orthology (KO) [BR:
rsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rsr03016
]
T7867_12175
Enzymes [BR:
rsr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
T7867_12175
Transfer RNA biogenesis [BR:
rsr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
T7867_12175
Prokaryotic type
tRNA splicing ligases
T7867_12175
BRITE hierarchy
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WPZ09014
LinkDB
All DBs
Position
complement(2739113..2740534)
Genome browser
AA seq
473 aa
AA seq
DB search
MATRKLTGKDLRKLGFPEGRAIGEAIKAMEEHFKGKSILHKKAMLKKVVGNPGLYLKHEA
WGPVAMALIIKKDHNETLALREKRIPYNIYGAEGIEQGAINQMEIAMKLPVTKYGALMPD
AHHGYGLPIGGVLATENAVIPYGVGVDIGCRMCMTMYDIPPAFVHQNTDELKDMLMENTK
FGQAVFKRPKNHEVLDRDLFNEINVLKSLKDKAWQQIGSSGGGNHFVEFGITEVHSEINE
FNLPVGKYLSVLSHSGSRGLGANIARHYTKLAMDMTKLPGEAKHLAWLDLDTEAGQEYWQ
AMNLAGDYASACHHQIHDRLAAALGEQPLALIENHHNFAWKEQDADGKEIIVHRKGATPA
GEGVLGIIPGSMTSPGFIVKGKGNVESINSASHGAGRVLSRTRAKQTLSKKEVKKHIKKA
GVTLIGSGLDEAPQVYKNIHEVMAQQTDLVDVIGTFEPKIVRMCGDERFGEVD
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgagaaaattaactggaaaagacctgagaaagctcggattccctgaaggcaga
gccattggcgaagccatcaaggctatggaagagcatttcaaaggcaaatccatattgcat
aaaaaagccatgttgaaaaaggtggtcggaaaccctggtctttacctaaaacatgaggcc
tggggccctgtagcgatggcattgatcatcaaaaaagaccacaatgaaacactggctttg
agggaaaaacgcataccatataatatatatggagcggaaggcattgagcaaggggctatc
aaccaaatggagatagccatgaaattgccggtgactaaatacggagcactaatgcccgat
gcacaccatggctacggactgccaattggtggcgtgctggcgactgaaaatgcggtgatc
ccttatggggttggagtagacattggctgcagaatgtgcatgacaatgtatgacatccct
cctgcttttgtgcatcagaacactgatgagctaaaagacatgctgatggagaacaccaaa
ttcggtcaagcggtatttaaaaggccaaagaaccatgaggtgttagacagagaccttttc
aatgaaatcaatgtattgaaatcattgaaagacaaagcatggcagcaaataggttcttct
ggaggcggaaaccactttgtggaattcggcattaccgaagtccattcggagatcaatgaa
ttcaacctgcctgttggcaagtatctgtcggtactctctcactcgggatcgagggggctt
ggtgcaaatatcgcgagacactacaccaagctggccatggatatgaccaaattaccggga
gaagctaagcatctggcttggttggatttagataccgaagcgggtcaggaatattggcaa
gccatgaatctagcaggtgattatgcttcggcatgccaccaccaaattcacgataggctg
gctgctgccttgggtgagcaaccactggcactgatcgaaaaccaccacaactttgcctgg
aaagagcaagatgcggatggaaaggagatcattgtgcatagaaaaggtgcaaccccagcg
ggcgaaggtgttttgggaattatcccaggctcaatgacttcaccgggatttattgtgaaa
ggtaaagggaatgtggaatccatcaattcagcttcacatggagcaggaagggtactttcc
agaaccagagccaagcagacgctttctaaaaaggaagtaaagaagcacatcaaaaaagct
ggagtcacattgatcggttctggtttagacgaggcgcctcaggtgtacaaaaacatccat
gaggtaatggctcaacaaactgatctggtggatgtaataggtacttttgagccaaaaatt
gtccgtatgtgtggcgatgaaaggtttggagaggtggattag
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