Allosaccharopolyspora coralli: GIY23_06405
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Entry
GIY23_06405 CDS
T06288
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sace
Allosaccharopolyspora coralli
Pathway
sace03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sace00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GIY23_06405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sace03019
]
GIY23_06405
03009 Ribosome biogenesis [BR:
sace03009
]
GIY23_06405
Enzymes [BR:
sace01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GIY23_06405
Messenger RNA biogenesis [BR:
sace03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GIY23_06405
Ribosome biogenesis [BR:
sace03009
]
Prokaryotic type
rRNA processing factors
GIY23_06405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
Motif
Other DBs
NCBI-ProteinID:
QGK69212
UniProt:
A0A5Q3Q435
LinkDB
All DBs
Position
1340636..1343971
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AA seq
1111 aa
AA seq
DB search
MLNMDTPAGNSSGQSPTPTDDSPQATVELPAKLRVHALAKQLGASSREVITTLESLGESV
RSAQSNITRDVALRVVRELRPEQLVDDTDEQQASVAPSDGGQVSASADGDRAEPTEPHTP
TESASTPFAAAADTQPSAEQAPAPAGLSPLFEAPQATFLAAAETAPAKSKPERSATEDSQ
DTSQGSDSDDEDDTDDEDGDQSGRRRRRRGRRGRGRGRGGDGDDGGGEESSDEQPDKPGR
QDKNDKGDKSEKKSKKDKKSDKDGGSEQADGAGPKEEKSSDDSGDGSSRRRRRRRRKGTG
DDESGRDDDPPNTVVHTRESAPEKDSGGDDEVRAIKGSTRLEAKRQRRRDGREAGRRRAP
VLSESEFLARRESVERRMVVREHGEQTQIAVLEDNVLVENFVTSSGSGSLVGNVYLGRVQ
NVLPSMEAAFVDIGKGRNAVIYAGEVDWDSAGLAGKSRRIEQALSSGDSVLVQVTKDPIG
HKGARLTTQISLPGRFLVYVPGGSATGISRKLPDTERKRLKEILKRIVPENAGVIIRTAS
EGTSEDSLERDVKRLQAQWDVIKERSEQPKAQAPQLLYEEPDLLIKVIRDLFTEDFTSLT
VQGDTAWDTIEAYVNHVAPDLVDRLYKHTGKNDVFTEQRINEQISKALDRKVWLPSGGYL
IIDRTEAMTVIDVNTGKFTGSGGNLEETVTRNNLESAEEIVRQLRLRDIGGIIVIDFIDM
VLESNRDLVLRRLTECLGRDRTRHQVAEVTSLGLVQMTRKRVGTGLLEAYSNTCEHCRGR
GVLVSTDLPATGGGKHEHKGDQKSEQKHDGGKQDGGKQDKQERRKRGKGQQSDAPAAESA
ADATQTEKSSSPSEEPKSNSSADQQDGSPKGRDRRNKAGRQDKADQRAGRDESQAAPVLE
PRGMADSGSQRSRSEEPVADSSGARDQQAGTAAAATGAATAGDKATGEKAPSGRSRRRKV
SRPAGSAGEAVTPVVAEPVSTEPTTTSEPTTTSEPTTTSPAAEPSTTPDGSAPSTSGAAG
DAEPSQAAERSRRRKVSRPAGSAGASSEPVVVNSAAAESSAAQPNGAAAPESAHSGSAES
DVVTAVPEAAPARRPRRRAASRPTGPAGGDA
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgttgaacatggatacgcccgctggaaactccagcgggcagtcgcccacacctaccgac
gactcgccccaggcgacggtcgagcttcccgcgaagctccgggtgcacgcgctggccaag
cagctcggcgcgagcagtcgcgaggtgatcacgacactcgagtcactgggtgagtcggtg
cgcagcgcgcagtcgaacatcacccgtgacgtggccctgcgtgtcgtccgggaactgcgc
cctgagcagctcgtggacgacacggacgagcagcaggcatccgtcgcgccgagcgacggt
ggccaggtgtctgcctccgccgacggcgaccgggccgagcccacggaaccgcacacgcct
accgagtcggcgagcacgccgttcgcggccgccgccgatacgcaaccgagtgccgagcaa
gcgcccgctcctgcgggcctgtcgccgctgttcgaggctccgcaggccacgttcctcgcc
gcggccgagacggcaccggccaagtcgaagccggagcggtcggcgacggaggactcccag
gacacgagccaggggtcggactcggacgacgaggacgacaccgacgacgaggacggcgac
cagtccggccgccgccggcgtcggcgtggtcggcgtggccgtggccggggccgcggtggt
gacggcgacgacggcggcggtgaggagtcgtcggacgagcagcccgacaagccggggcgc
caggacaagaacgacaagggcgacaagagcgagaagaagtccaagaaggacaagaagtcc
gacaaggacggcgggtccgagcaggcggacggcgccgggccgaaggaggagaagtcctcc
gacgactcgggtgacggatccagtcggcgtcgccgccgcaggcgtcgcaagggcacgggc
gacgacgagtccggccgggacgacgatccgccgaacaccgtggtgcacacgcgcgagtcc
gcgccggagaaggactcgggcggcgacgacgaggtccgtgcgatcaagggctcgacccgt
ctggaagccaagcgtcagcgccgccgtgacggtcgcgaagcggggcgtcgccgcgcgccg
gtgctctccgagtcggagttcctcgcccgccgcgagtccgtcgagcgccgcatggtggtc
cgggagcacggcgagcagacccagatcgcggtgctggaggacaacgtcctcgtcgagaac
ttcgtgacctcgtcgggcagcggttcgctggtcggcaacgtctacctcggccgcgtgcaa
aacgtgctgccgagcatggaggccgcgttcgtcgacatcggtaagggccgcaacgcggtc
atctacgccggtgaggtcgactgggactcggcgggactcgcgggcaagtcgcgccggatc
gagcaggcgttgagctcgggcgacagcgttctcgtgcaggtcaccaaggacccgatcggg
cacaagggtgcgcggttgaccacccagatcagcctgccaggacgcttcctggtgtacgtg
ccgggcggcagcgccaccggcatcagccgcaagctgccggacaccgagcgcaagcgcctc
aaggagatcctcaagcggatcgttccggagaacgcgggcgtcatcatccgcaccgcgtcg
gagggcactagcgaggactcgctggagcgtgacgtcaagcggctgcaggcgcagtgggac
gtcatcaaggagcgctccgagcagccgaaggcgcaggctccgcagctgctctacgaggag
ccggacctgctgatcaaggtcatccgggacctgttcaccgaggacttcacgtcgttgacc
gtccagggtgacaccgcgtgggacaccatcgaggcctacgtgaaccacgtggcaccggac
ctggtggaccggctgtacaagcacaccggcaagaacgacgtgttcaccgagcagcgcatc
aacgagcagatctcgaaggctctggaccgcaaggtgtggttgccttccggcggatacctg
atcatcgaccgcaccgaggcgatgacggtcatcgacgtcaacactggcaagttcaccggc
tccggcggcaacctggaggagacggtgacccgcaacaacctggagtcggcggaggagatc
gtccgccagctccggttgcgcgacatcggcgggatcatcgtcatcgacttcatcgacatg
gtgttggagtcgaaccgggatctggtcctgcggcggctgaccgagtgcctcggccgcgac
cgcacgcggcaccaggtcgccgaggtgacctcgttgggtctggtgcagatgacccgcaag
cgagtcggcaccggtctgctggaggcgtacagcaacacgtgcgagcactgccgtggccgt
ggcgtgctggtgtcgacggatctgcccgccacgggtggcggtaagcacgagcacaagggc
gatcagaagtccgagcagaagcacgacggtggcaaacaggacgggggcaagcaggacaag
caggagcgtcgtaaacgcggcaagggccagcagtccgacgctccggccgccgaatccgct
gcggacgccacgcagacggagaaatcctcgtctccgtcggaggaaccgaagtccaactcc
agcgcggatcagcaggacgggtccccgaaggggcgcgatcggcgaaacaaggccggtcgg
caggacaaggcagaccagcgtgcgggtcgcgacgagtcgcaggccgctcccgtgttggaa
ccgcggggcatggccgactccggctcgcagagatcccggtccgaggagcctgtggcggac
tcgtccggagcccgtgaccagcaggcgggcacggcagcagcggcaacgggagcggcgaca
gccggtgacaaggcaaccggtgagaaggcgccctccggccggtcacgtcgtcgcaaggtg
agtcgccccgcaggcagcgcgggcgaggcggtgaccccggtggtcgccgaaccggtttcc
accgagccgaccactacctccgagccgaccactacctccgagccgaccactacgtccccg
gccgccgagccgagcacgacgccggacggctcggccccgtccacgagtggtgccgctggt
gacgccgagccctcgcaggctgccgagcgctcgcgtcgtcgcaaggtgagcaggcccgca
ggcagtgcgggcgcgtcgtccgagccggtggtcgtgaactctgcggctgccgagtcgtcg
gcggcacagccgaacggcgccgccgcacccgaatcggcgcattcggggtcggccgagtcc
gacgtcgtcacagcggttccggaggcggctccggctcgtcgtccgcgcaggcgagccgcg
tcgcggcccaccggtcccgccgggggcgacgcctga
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