Streptomyces chromofuscus: IPT68_20730
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Entry
IPT68_20730 CDS
T07378
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
schf
Streptomyces chromofuscus
Brite
KEGG Orthology (KO) [BR:
schf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
schf03016
]
IPT68_20730
Enzymes [BR:
schf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
IPT68_20730
Transfer RNA biogenesis [BR:
schf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
IPT68_20730
Prokaryotic type
tRNA splicing ligases
IPT68_20730
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QOV42267
UniProt:
A0A7M2T0T9
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Position
4601290..4602483
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AA seq
397 aa
AA seq
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MSYVEMPGAKVPIRLWTDPATVEDGALQQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMQGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKIEAAIPVGRGMHDSPVDPG
RLHGFATGGWDDFWGRFGGVAEAVRFRQERAAKQMGTLGSGNHFIEVCIDTSGSVWLMLH
SGSRNIGKELAEHHIGVAQKLPHNQGLVDRDLAVFIADTPQMAAYRNDLFWAQEYAKYNR
TIMMALLKDVVRKEFKKAKPTFEQEISCHHNYVAQERYAGTDLLVTRKGAIRAGSGEYGI
IPGSMGTGSYIVKGLGNEKAFNSASHGAGRRMSRSAAKRRFSTKDLEEQTRGVECRKDSG
VVDEIPGAYKPIEQVMDQQRDLVEVVARLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgtcgaaatgccgggcgcgaaggtgccgatccgtctgtggaccgaccccgcg
acggtcgaggacggggcgctccagcagctgcggaacgtcgcgacactgccgtggatcaaa
gggctggccgtgatgccggacgtgcattacgggaagggggcgacggtcggctcggtgatc
gccatgcagggcgccgtctgcccggcggcggtcggtgtcgacatcggctgcgggatgtcc
gcggtgaagacctccctgacggcgaacgacctgcccggggatctgtcccggctgcgctcg
aagatcgaggcggcgattccggtggggcgggggatgcacgacagccccgtcgacccgggg
cggctgcacgggttcgcgaccggggggtgggacgacttctgggggcggttcggcggggtg
gccgaggcggtgaggttccgtcaggagcgggcggccaagcagatgggcacgctgggcagc
ggaaatcattttatcgaagtatgtattgatacgtccggttcggtgtggctgatgctgcac
tccgggtcccgcaacatcggcaaggaactcgccgagcaccacatcggcgtcgcccagaaa
ctcccgcacaaccaggggctggtcgaccgcgacctcgccgtcttcatcgcggacaccccg
cagatggcggcatatcgcaacgacctgttctgggcgcaggagtacgccaagtacaaccgc
acgatcatgatggcgctcctgaaggacgtggtccgcaaggagttcaagaaggccaagccg
acgttcgagcaggagatctcctgccaccacaactacgtggcgcaggagcggtacgcgggc
acggacctgctcgtgacccgcaagggcgcgatccgggccggctccggggagtacgggatc
atccccgggtcgatgggcaccggttcgtacatcgtgaaggggctcggtaacgagaaggcc
ttcaactcggcgtcgcacggtgccggccggcggatgagccgcagcgccgccaagcggcgc
ttctccaccaaggacctggaggagcagacgcggggcgtggagtgccgcaaggactccggt
gtggtggacgagatcccgggggcgtacaagccgatcgagcaggtgatggatcagcagcgg
gacctggtggaggtcgtcgcccggctgaagcaggtcgtctgcgtgaagggctga
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