Salicibibacter cibarius: HUG15_08075
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Entry
HUG15_08075 CDS
T07370
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
scia
Salicibibacter cibarius
Pathway
scia03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
scia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HUG15_08075 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scia03400
]
HUG15_08075 (ligD)
Enzymes [BR:
scia01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HUG15_08075 (ligD)
DNA repair and recombination proteins [BR:
scia03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HUG15_08075 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
mRNA_cap_enzyme
DNA_primase_S
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
QQK75542
UniProt:
A0A7T7CB37
LinkDB
All DBs
Position
complement(1544526..1546322)
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AA seq
598 aa
AA seq
DB search
MSFMLAFSREQLPEGKQWHYELKYDGYRAQLIWDGSTCTLFSRNHNRLEKQFPEIIDTCQ
RHFPKKTVHLDGEIVLFQNPGLADFHALKSRHRLRSQASILAASRKRPAYFLAFDILVYE
DRELKNEPYIKRKKELERTFKNFDLPTNPAHHDTRRIQSIPMYENAETVQYQAKLYRSEG
IVAKIRQHTYSGKRSESWLKIKTPYVITCFILSYTPANGYFEVGVFKDGKAVTLGQCPHG
FSKTEKETLVTIIKNNGSWNAQAQKYEINPSIVVTLAFTTYSNDFREAHFQSFELNIPAG
RCTWETWENAMLKWPKRVTLTHPDKPLWEAPEIFKRDFLAYTRTVAPFCLPHLAERLLTV
VRYPHGRFGEAFFQKQCPEYAPSYVETETFEEIDYIISNHVDTLLWLANQLAIEWHIPFS
LSSSRYVEEIVLDLDPPDVEAFSLAIEGANVLKDIFDQLGLTSFVKFSGNKGLQVYVPLI
ENRYTYEETHPFTEAIGAYCLRARPDLFTRERFKKHRGQKLYIDIPQHAFGKTIIAPYSL
RGNAEALVACPLFWEEVSSSLDRTAFTLHGVQQRLEDEGCPFRLYMETQNLLPDFSHY
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcatgttagcattcagccgggaacaacttcccgagggaaaacaatggcattat
gaattaaaatacgatgggtatcgcgcgcagctaatttgggacgggtcgacatgcaccttg
ttcagccgtaatcataatcgtttggaaaaacaatttcccgaaattatagacacttgccag
cgacatttcccgaaaaaaaccgtgcacctcgacggtgaaatcgttctttttcaaaacccg
ggacttgccgattttcatgcccttaaaagccggcatcgccttcgttcacaagcttccatt
cttgccgcaagccgtaagcgtcctgcgtactttctcgcctttgatatccttgtatacgag
gatcgggaattaaaaaatgaaccctacataaagagaaaaaaagaattggaaagaacattc
aagaattttgatctgcctacaaacccagcgcaccatgatacacgccggatacaatcgatc
cctatgtatgagaatgctgaaaccgttcaatatcaagccaaactatatcgcagcgagggg
atcgttgctaaaatacgtcagcatacttacagcgggaaacgctcggaatcctggttaaaa
attaaaaccccttacgtgattacctgtttcatcctttcttatacgcccgccaatggatat
tttgaagtcggggtttttaaagatggaaaagctgtcacccttggccagtgtcctcatgga
ttttcaaaaacggaaaaagaaacactcgtcaccatcataaaaaataacggcagctggaat
gcacaagcgcagaaatatgagatcaatccgtccatcgttgtgacgctcgcgtttacgacg
tacagcaatgattttcgggaagcccatttccagtcatttgaactcaacatccctgccgga
aggtgtacatgggaaacgtgggaaaatgccatgttgaaatggccgaagcgggtaacgctc
acccaccccgacaaacctttgtgggaagcacccgagattttcaagcgcgattttcttgcc
tacacacgaacggttgcacccttttgtctgccccatcttgccgagcggttactgaccgtc
gttcgctatccgcatggaaggtttggcgaagctttttttcaaaaacaatgcccggaatac
gccccttcctatgtagaaaccgaaacctttgaagagatcgattatatcatttccaatcac
gtcgatacattgctgtggcttgccaaccaactcgctatcgaatggcacattccgttttcg
ctatcgtcgagccgttacgtcgaagagatcgtccttgatcttgacccgccggatgtggaa
gctttttcattggcgatcgaaggggcaaatgttttaaaagacatcttcgatcagctcggg
ttaacaagctttgtgaaattttccggaaataaagggttgcaagtgtatgtccccctcatt
gaaaaccgatacacatacgaagaaacgcatccgtttacggaagcaatcggtgcttactgc
ttgcgggcaaggcctgatttatttacgcgggaacgtttcaaaaaacaccgtgggcaaaag
ctgtacatcgatattccccagcatgcgtttggaaagacaatcatcgcaccgtattcactc
aggggaaatgcggaagcgctcgtcgcctgccctcttttctgggaggaagtgtcttcaagc
cttgaccgtacggcattcacgctccacggtgtccaacaacggttagaggatgaaggttgc
cctttccgcctttatatggaaacgcaaaatctactcccggatttcagccactattaa
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