Salicibibacter cibarius: HUG15_12620
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Entry
HUG15_12620 CDS
T07370
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
scia
Salicibibacter cibarius
Pathway
scia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUG15_12620 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scia03019
]
HUG15_12620 (rny)
Messenger RNA biogenesis [BR:
scia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HUG15_12620 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
KH_2
Pilin_N
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
QQK76313
UniProt:
A0A7T6Z3V9
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Position
complement(2439003..2440574)
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AA seq
523 aa
AA seq
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MNGTLILIISILLIVVAVLSGFIGYVIRKKIAEAKITSAEYAANKMIEEAERDADNSKKE
SLLEAKDEAYRLRSEAEDDIRERRTEIQNQESRLQQKEEALDRKSETLDNKEESLELREQ
TLAEKQEETETMNSKVEQLISEQQEELERISGLTREDARQIVRAETERELDHEKAVMIKE
NTDKVKEEANKKAKDILSVALQRCAADHVAETTVSVVHLPNDEMKGRIIGREGRNIRALE
TLTGIDLIIDDTPEAVILSGFDPIRREIARTALERLVQDGRIHPARIEETVDKSRREVDE
RIREYGEETTFEMGIHHLHPDLLKILGRLRFRTSYGQNVLNHSTEVAYLTGLMAAELGED
VQLARRAGLLHDIGKAIDHEVDGSHVEIGVELTKKYNENEVVVNSVASHHGDVEATSVIA
TLVAAADALSAARPGARRETLETYIRRLEKLEEIAESFDGVEKTYAIQAGREVRIMVKPD
LVDDVLAHRLARDITKRVENELDYPGHIRITVIRETRAVNYAK
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgaacggaacactcatcttgatcatctccattttgcttattgtcgttgctgttttaagc
gggtttattggttatgtcatccgtaaaaaaattgccgaagcaaagattacgagtgcagaa
tatgcggcaaataagatgatcgaagaagcggaacgcgatgcggataacagcaagaaagaa
tcactgttggaagccaaagatgaggcgtaccgcttgcgttccgaagccgaagacgatatt
cgcgaacggagaaccgaaattcagaatcaggaaagccgccttcagcaaaaagaagaggcg
cttgaccgtaaaagtgaaacgcttgacaacaaggaagaatctctagaactccgggagcaa
acgctcgctgagaaacaagaagagacagaaacgatgaatagcaaagtggaacaattaatt
tccgaacaacaggaagaactggaacggatctcggggctgacgagagaagacgcccgacag
attgtccgggctgaaaccgaacgggaactcgatcatgaaaaagcagtgatgattaaggaa
aatacggataaagtcaaggaagaagcaaataagaaagccaaagatattctttctgtggca
ctgcaaagatgcgcggctgatcatgtggcggaaacgacggtatccgttgtccatttgccg
aatgatgaaatgaaaggccgaatcatcgggcgtgaagggagaaatattcgcgcgttggag
acgttaaccggaattgatttaatcatagacgatacacccgaggcggtcatcctatccggc
ttcgatccgattcgaagagaaatcgcgcgcacggcgttggagcggctcgttcaagatgga
cggattcaccccgcccgcattgaagaaaccgtggataaatcccggcgtgaggtcgatgaa
cggatacgtgaatatggggaagaaacgacgtttgaaatggggattcatcatttacatcct
gatcttctcaaaattttgggccgtctgcgatttagaacgagctacgggcaaaatgtcttg
aatcattcaacggaagtcgcgtatttaacaggtttaatggcggcggaacttggagaagat
gtgcagcttgcccgtcgggcaggattgcttcatgatatcggaaaagcgattgaccatgag
gtcgacggcagtcatgttgaaataggtgtcgaattaacgaaaaaatacaatgaaaacgag
gtcgttgtgaacagcgttgcctctcatcacggggatgtcgaagcaacttcagtcattgct
acactcgtcgctgctgcagatgccctgtctgcggcaaggccgggtgcaagacgggaaacg
cttgaaacgtacattcgccgtttggaaaaactcgaggagattgcagaatcatttgatggt
gttgaaaagacgtatgccatacaagcgggtcgcgaagtccgcattatggtaaaaccagac
ttggtcgacgacgtgttggcccatcggctggcacgggacattacgaagcgagtggaaaat
gaacttgactaccccgggcatatacgaatcaccgttattcgtgaaacgagggcagtaaat
tatgcaaaataa
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