Salmonella enterica subsp. enterica serovar Javiana: CFSAN001992_05715
Help
Entry
CFSAN001992_05715 CDS
T02479
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
senj
Salmonella enterica subsp. enterica serovar Javiana
Pathway
senj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
senj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFSAN001992_05715 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
senj03019
]
CFSAN001992_05715 (rne)
03009 Ribosome biogenesis [BR:
senj03009
]
CFSAN001992_05715 (rne)
Enzymes [BR:
senj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CFSAN001992_05715 (rne)
Messenger RNA biogenesis [BR:
senj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CFSAN001992_05715 (rne)
Ribosome biogenesis [BR:
senj03009
]
Prokaryotic type
rRNA processing factors
CFSAN001992_05715 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AGF81463
LinkDB
All DBs
Position
1101019..1104222
Genome browser
AA seq
1067 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
SAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQME
TPHYSVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPA
PTPVEPAVSVATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKAVETAAPKAEEKAE
RQQDRRKPRQNNRRDRNERRDTRDNRAGRDGGESRDDNRRNRRQAQQQNAETRDTRQQET
AEKVKTGDEQQQTPRRERSRRRNDDKRQAQQEVKALNREEQPVQETEQEERVQQVQPRRK
QRQLNQKVRFTNSAVVETVDTPVVVDEPRPVENVEQPVPAPRTELAKVDLPVVADIAPEQ
DDSVEPRDNTGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEMASGKV
WIRYPIVRPQETQVVEEQREADLALPQPVAAEPQVIAATVALEPQASVQAVENVAVEPQT
VAEPQAPEVVGVETTHPEVIAAPVDEQPQLIAESDTPEAQEVIANAEPVAETADASITVA
ENVADVVVVEPEEETKAEAAVVEHTAEETVIAPAQVVEKPQDVVCVDDHNHASAPMTRAP
APEYVPETPHHSDWQRPSFHFEGKGAAGGHSATRVASAPATRPQPVE
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcgactcagcaggaagagttgcgcgtcgcccttgtagat
gggcagcgtctgtacgatctggatatagaaagccccggacacgagcagaaaaaagcgaac
atctataaaggcaaaattacccgtattgaaccgagcctggaagcggcttttgttgattac
agcgcagaacgccacggtttcctcccgttaaaagaaattgcccgcgaatatttccccgct
aactacagcgctcatggtcgcccgaacattaaagacgtgttacgcgaaggccaggaagtc
attgttcaaatcgataaagaagagcgcggcaacaaaggcgcggcgttaaccacctttatc
agtctggcgggcagctacctggtgctgatgccgaataacccgcgcgcgggtggtatttcc
cgtcgcattgaaggcgacgatcgtaccgagttaaaagaagcgttggccagcctggaactt
cctgaagggatggggcttatcgtgcgtaccgcgggcgtgggtaaatccgccgaagcgttg
cagtgggatttaagcttccgcctgaaacactgggaggccattcagaaagccgctgaaagc
cgtcccgcgccgttcctgatccatcaggaaagcaacgtcatcgtacgcgcgtttcgcgac
tatctgcgtcaggatatcggtgaaatcctgatcgacaatccaaaagtgatggaaatggcg
cgtcagcatatcgccgcgttgggccgcccggattttagcagtaaaattaagctgtacacc
ggtgaaatcccgttgttcagccattaccagatcgaatcgcagatcgagtcagcgttccag
cgtgaagtgcgcctgccctccggcggctccatcgtcattgacagtaccgaagcgttaacc
gccatcgatatcaactccgcccgcgcgactcgcggcggcgatatcgaagaaaccgcgttt
aacaccaacctggaagcggccgatgagattgcccgccagttgcgtctgcgcgacctgggc
ggcctgatcgttatcgactttatcgatatgacgccggtacgtcaccagcgcgcggtagaa
aaccgtctgcgtgaagcggtgcgtcaggaccgggcgcgtattcagattagccatatttcc
cgcttcggcctgctcgaaatgtcgcgtcagcgcctgagtccgtcgctgggcgaatccagc
catcacgtgtgtccgcgctgtagcggtaccggcaccgtgcgcgataacgaatctctgtcg
ctgtccattctgcgcctgattgaagaagaagcgctgaaagagaatacgcaggaagtccat
gccattgttccggtgccgatcgcctcttatctgcttaacgaaaaacggacggcagttaac
gctattgagacgcgtcaggatggcgtccgctgtgtcatcgtcccgaacgatcagatggaa
acgccgcactattccgtgctgcgcgtacgcaaaggggaagaaacgccgacactgagctac
atgctgccgaagctgcacgaagaagcgatggcgctgccttctgaagaagagtacgccgag
cgtaaacgcccggaacagcctgcgctggcgacattcgctatgccagatgtgcctccggcg
ccgacgcctgtcgaaccggcggttagcgtcgccacggcgaaaaaggataatgttgccgcc
gcgcagcctgcccagccgggtctgtttagccgcttcctaaacgcgctgaaacaactgttc
agcggtgaagaaacgaaagccgtcgaaacagccgcgccgaaagcggaagaaaaagcggag
cgtcagcaggatcgtcgcaagccacggcagaacaaccgtcgcgatcgtaacgaacgccgc
gacacccgtgataaccgtgccggacgtgacggcggcgagagccgcgacgataatcgtcgt
aaccgtcgccaggcgcagcagcaaaatgcggaaacgcgcgacacccgccagcaggaaacg
gcggaaaaagtgaaaactggcgatgagcagcaacagacgccgcgtcgcgaacgcagccgc
cgtcgcaatgatgacaaacgccaggcgcagcaggaagtaaaagcgcttaaccgcgaagaa
cagcctgtccaggagaccgagcaggaagaacgcgttcagcaggttcagccgcgccgcaag
cagcgtcagcttaatcagaaagtccgctttaccaacagcgcagtggttgaaacggttgat
acgccagtcgtcgtcgacgaaccacgcccggttgaaaacgttgaacagcccgttccagcg
ccgcgtaccgaattggcgaaagttgatttacctgtcgttgccgatatcgcgccggagcag
gatgatagcgtagaacctcgcgataatactggtatgccgcgtcgctcccgccgttctccg
cgccacctgcgcgttagcggtcagcgtcgtcgtcgctatcgtgacgagcgctacccgaca
caatcgccgatgccgttaaccgtcgcctgcgcgtcgccggaaatggcgtccggtaaagtc
tggatccgctacccgattgtccgtcctcaggaaacgcaggttgttgaagagcagcgtgaa
gcagatctggcgctgccacaaccggttgccgctgaaccgcaggttatcgctgcgaccgta
gcgttagaaccacaagcgtcggtacaggcagtagaaaacgttgccgttgagccgcagacc
gtcgccgaaccacaggcgccggaagtcgtcggggtcgagacaacgcatccggaagtgatt
gccgcaccggttgatgaacagccgcaactgattgccgaaagcgatacgccggaagcgcaa
gaggttattgctaacgccgaaccggtagcagaaaccgccgacgcgtccattacggtggct
gaaaacgtagctgatgttgtcgttgtcgagccagaagaagagacaaaagcggaagcggct
gttgtggagcacacggcagaagaaaccgttatcgcaccggcccaggtggtggaaaagccg
caggacgttgtctgcgttgacgatcataaccacgccagcgcgccgatgacgcgtgcgcca
gcgccggaatatgtgccggaaaccccgcaccatagcgactggcaacgcccttccttccac
tttgaaggtaaaggcgcagcaggcggacacagcgccacacgtgtcgccagcgccccggcg
acacgcccacaaccggtagaatga
DBGET
integrated database retrieval system
