Scleropages formosus (Asian bonytongue): 108942182
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Entry
108942182 CDS
T04919
Symbol
rag1
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
108942182 (rag1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sfm04121
]
108942182 (rag1)
Enzymes [BR:
sfm01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108942182 (rag1)
Ubiquitin system [BR:
sfm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108942182 (rag1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAG1
RAG1_imp_bd
zf-C3HC4
zf-C3HC4_2
zf-RAG1
zf-C3HC4_3
zf-C3HC4_4
zf-RING_2
zf-RING_UBOX
zf-rbx1
zf-RING_6
zf-Nse
Motif
Other DBs
NCBI-GeneID:
108942182
NCBI-ProteinID:
XP_018620842
LinkDB
All DBs
Position
5:24798497..24803860
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AA seq
1088 aa
AA seq
DB search
MGGLWISAHADIMEEEGSAHSGSATWRSVPQELQHPYSKFSDWKFKLFRVKSMEKAPLPG
DAQPAPAPSPPAPQQSELEVPPGSPTASVMRLCLGGKSKESLESAGARVDRKLQEMDTHM
GHLRCLCRLCGVALRKVKGGAEHNVQGPLDESSGSALRRMGCKAKTWPEVVLKVFKVDVT
GDMETVHPPFFCHRCWKAAMRGGGFCCFSGTRVTRWQPHSALCRLCFPRKLSLQRSSRKR
CKPSRAGSQFVRAKKMKSEFFDHGFGSGAGWQWRSAEHGANSKPWVKPSLQRALWVRNVT
GCKNIHLSSKLLLEDFPTDFLRAVTCQVCDHLLADPVQSPCRHLFCRTCILKYIRALGQR
CPLCTFPCAPSDLVTPAKAFLGVLQSLLLRCPREDCREAVRLESFGSHCRGHQEADEEGD
GGQGQTFNSYLPVNKGGRPRQHLLSLTRRAQKHRLKELKNQVKAFAEKEEGGDIKSVCLT
LFLLALRAGNEHRQADELEAMMQGRGFGLHPAVCLAIRVNTFLSCSQYHKMYRTVKATSG
RQIFQPLHTLRNAEKELLPGFHPFEWQPALKNVSSATDVGIIDGLSGWAASVDDALVETI
SRRFRYDVALVAALKDLEEDIVEGLKEHSLEDSACTAGFSVVIKESCDGMGDVSEKHGNG
PAVPEKAVRFSFTVMSISVQPEGSQEKFTIFQESKPNSELSCKPLCLMFVDESDHETLTA
VLGPVVAERNAMKQSRLILSIGGLPRFFRFHFRGTGYDEKMVREMEGLEASGSTYICTLC
DSTREEASNNMVLHSITRSHAENLERYEIWRTNPFSESMEELRDRVKGVSAKPFMETQPT
LDALHCDIGNATEFYKIFQDEIGEVHLKSNPSREERRQWRSALDKQLRKRLKLKPVMRMN
GNFARRLMTREAVDAVCEVVPSEERREALRELVELYLQMKPVWRSTVPAKDCPDQLCRYS
FNSQRFADLLSTTFKHRYDGKITNYLHKTLAHVPEIIERDGSIGAWASEGNESGNKLFRR
FRKMNARQSKTFELEDVLKHHWLYTSKYLQKFMEAHKNSAKALQATIDPVETQDDLGESL
DVADSLEL
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atgggaggattatggatcagcgcccacgccgacatcatggaggaggaggggtcagcgcac
agcggcagcgccacctggcgctctgtcccgcaggaactgcagcacccctactccaagttc
tctgactggaagttcaagctcttccgggtgaagtccatggagaaagcgcccctgccaggt
gacgcccagcctgctccggctccatcacccccagcgccgcagcagtctgagctggaggtc
ccgcccgggagccccactgccagcgtgatgaggctgtgcctcgggggaaagagcaaggag
agcctggagagcgcgggcgcccgtgtggaccgtaagcttcaggagatggacacccacatg
ggccacttgagatgcctgtgccgcctgtgtggggtggcgctgcgtaaagtcaaaggtgga
gcggagcacaacgtccaggggccgctggacgagagcagcgggagcgccctgcgcaggatg
ggctgcaaggccaagacatggccggaagtcgtcctcaaggtgttcaaggtcgacgtgaca
ggggacatggaaacggtgcacccccccttcttctgccaccgctgctggaaggcggcgatg
cgcggcgggggtttctgctgtttctcagggacccgggtcacccggtggcagccgcactcc
gccctgtgtcgcctctgctttcccaggaagctgtccctgcagcgcagcagccgcaaacga
tgcaagccgagccgcgccggttcccaattcgtccgagccaagaagatgaagtccgagttc
ttcgatcacggctttggtagcggtgccggctggcagtggcggagcgcagagcacggcgcc
aacagcaagccctgggtgaagcccagcctccagagggcgctgtgggtgaggaatgtcacc
ggctgcaagaacatccacctgagctccaagctgctcttggaggacttcccgacggacttc
ctccgtgccgtgacctgccaggtgtgcgaccacctgctggccgaccccgtgcagtcaccg
tgcaggcacctcttctgtcgcacctgcattctcaagtacatccgtgccctgggccagcgc
tgtccactctgcacctttccctgcgcccccagcgacctggtgaccccagccaaggccttc
ctgggtgtcctgcagtcgctcctgttgcggtgccccagagaagactgcagggaagcagtt
cggcttgagtccttcgggtctcattgccgcggccaccaggaggccgatgaagagggcgat
ggggggcagggccagaccttcaacagctatctgcccgtcaacaaaggcggccgcccccgg
cagcacctgctgtcactgacccgacgggcccagaagcaccgcttgaaggagctgaagaac
caggtgaaggcatttgccgagaaggaggagggcggtgacatcaagtctgtgtgcctcacg
ctcttcctgctggcgctgcgggcgggaaatgagcaccggcaggcggacgaactggaggcc
atgatgcaaggcaggggtttcggactgcatcctgccgtgtgtttggcaatacgggtcaac
accttcctgagctgcagccagtaccacaaaatgtaccgcaccgtgaaagccactagtggg
cgccagatcttccagcccctccacactctgcgcaacgctgagaaagagctgctcccgggt
ttccaccccttcgagtggcaacctgcgctcaagaacgtgtccagcgccacagatgtgggc
atcatcgatgggctctcgggctgggctgcctctgtggatgacgcgctggtggagaccatc
tcacggcgcttccgctacgacgtggccctggtggcggccttgaaggacctggaagaggac
attgtggaagggctgaaggagcatagccttgaagactcggcctgcaccgcagggttcagc
gtggtgatcaaagagtcctgtgacggcatgggtgacgtaagcgagaagcacgggaacggt
ccggcggtgcccgagaaagctgtgcgcttctccttcacagtgatgtcgatctctgtgcag
cccgagggcagtcaggagaagttcaccatctttcaagaatcgaagcccaactcggaactg
tcctgcaaaccgctctgcttaatgttcgtggacgagtctgaccatgagaccctaacggcc
gtgctgggccccgttgtggccgagcgcaacgccatgaagcagagccgcttgatcttgtcc
atcggggggctgcctcgattcttccgcttccacttccgaggaacaggctatgacgagaag
atggtgagagagatggagggcctggaggcctctggatccacctacatctgcaccctgtgt
gattccacgagggaagaggcatccaataacatggtgctgcactccatcaccaggagtcat
gcagagaacctggagcgctacgagatctggaggaccaaccccttttcggagtccatggaa
gagctccgcgaccgcgtcaagggagtttcagccaagcccttcatggagacccagccgacc
ctggacgccctacactgtgacatcggtaacgccaccgagttctacaaaatcttccaggat
gaaatcggtgaagttcacctgaagagcaaccccagccgagaggagagacgacagtggcgc
tcggccctggacaagcagctgaggaagaggctgaagctgaagccggtgatgcgcatgaat
ggcaacttcgcccggcggttgatgacccgcgaggcggtagatgccgtgtgtgaggtggta
ccatcggaggagcggagggaggccctcagggagctcgtggagctgtacctgcagatgaag
cccgtttggcgctccaccgttccagctaaggactgccctgaccagttgtgccgctacagc
ttcaactcccagcgctttgcggacctcctgtccaccaccttcaagcaccgctatgacggc
aagatcaccaactacctccacaagaccctcgcccatgttcctgaaatcatcgagagggac
ggctccattggggcctgggccagcgagggaaacgaatctggcaacaagctgtttcgccgc
ttccgcaagatgaacgcccggcagtccaagaccttcgagctggaggatgtgctgaagcac
cactggctctacacctccaagtatctgcagaagttcatggaggcacacaagaactctgcc
aaggccctgcaagccaccattgacccagtggagacccaagatgacctgggcgaatcactg
gatgtcgcagactctttggaactttga
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integrated database retrieval system
