Sphingopyxis granuli: SGRAN_0713
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Entry
SGRAN_0713 CDS
T04372
Symbol
rne
Name
(GenBank) RNase E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sgi
Sphingopyxis granuli
Pathway
sgi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SGRAN_0713 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgi03019
]
SGRAN_0713 (rne)
03009 Ribosome biogenesis [BR:
sgi03009
]
SGRAN_0713 (rne)
Enzymes [BR:
sgi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SGRAN_0713 (rne)
Messenger RNA biogenesis [BR:
sgi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SGRAN_0713 (rne)
Ribosome biogenesis [BR:
sgi03009
]
Prokaryotic type
rRNA processing factors
SGRAN_0713 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AMG73108
UniProt:
A0AA86GI84
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All DBs
Position
complement(760879..763539)
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AA seq
886 aa
AA seq
DB search
MTTRMLIDARHREETRVAVTKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPKEDREALLREEAEHAAEAAMRAEEDLDELEGDVAEVEG
HDDDENGDAPAPVTVGEDSDDDMDAEAGDGDGESDADNGDAEELKDDRGGRRGRGRARGG
RKGRGRGRNGDDDGESRMSLRRRYKIQDVIRRRQVMLVQVVKEERGNKGAALTTYLSLAG
RYCVLMPNTMHGGGISRKISNGADRRKLKAMIDDLNLPPTMGCIVRTAGMSRTKTEIKRD
FDYLARLWDEIREKTLASSAPALVHSDSDLVKRAIRDIYHKDIEEVLVEGDEGYKAAKQF
MKLLMPSHARRVKQYADPVSLYQRYGVEDQLAGMLNPVVQLKSGGYLVINPTEALVSIDI
NSGRSTREHNIEQTALNTNLEAAHEIARQLRLRDMAGLIVIDFIDMDHGSNVRKVERAMK
DALKNDRARIQIGRISGFGLMEMSRQRLRTGVLEASTRPCPHCEGTGLVRTASSAGLSAL
RLIEEEAARGKGSRITLRASQEATFYLLNEKRRELREIEELYGVSVEILPDGETEGARMV
VEVGGPPPTQQRSFAPIVEIEEEEDESFDDETAEEDEEERADRPHDEGDGDGRKRRRRRR
RGRRGRRDDENGESGENGDAGDADTDAEADIGTAAESADVEPAEAEAPAEAPADEAEAKP
RRRRGGRGRKKAEAADEGVTEAAPVEAEAPEAEAPEPVAVEAEVEAEAPAAEEKPKRKRA
PRKPKAAPVEAPAETEAAEAPAAAPEATLPVEAEAKPAPKKRASRSKKAVAAAEATPAET
AEAPVAAPEREAEPATVADEGALDEGALDEATGEPRRGWWQRTFGN
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgcgcatgttgatcgacgcgcggcaccgggaagaaacccgggtcgccgtcacc
aagggaaaccgcatcgaggagtttgatttcgagtccgccgagcacaagcagctcaagggc
aatatctatctggccaaggtcacccgcgtcgaaccgtcgctgcaggcggcgttcgtcgaa
tatggcggcaaccgtcacggctttctggccttcagcgaaatccaccccgattattaccag
attccgaaggaagaccgcgaagcgctgctccgcgaagaggccgagcatgccgccgaggcg
gcgatgcgcgccgaagaggatctcgacgagctggaaggcgacgtcgccgaggtcgaggga
catgacgacgacgagaatggcgacgccccggcgccggtgacggtcggcgaggacagcgac
gacgacatggacgccgaggccggcgatggcgacggcgaatccgatgcggacaatggcgac
gccgaggaattgaaggacgaccgcggcgggcgccgcgggcgcggacgggcgcgcggtggc
cgcaagggtcgcgggcgcggccggaacggcgacgacgacggcgaaagccgcatgtcgctg
cgccgccgctacaagatccaggacgtcatccgccgccgccaggtgatgctggttcaggtc
gtcaaggaggagcgcggcaacaagggcgccgcgctgaccacctatctgtcgctcgccggc
cgctattgcgtgctgatgccgaacacgatgcacggcggcggcatcagccgcaagatctcg
aacggcgccgaccgtcgcaagctcaaggcgatgatcgacgatctcaatctgccgccgacg
atgggctgcatcgtccggaccgcggggatgagccgcaccaagaccgagatcaagcgcgac
ttcgactatctggcccgcctgtgggacgagattcgcgaaaagacgctggcgtcgagcgcc
ccggcactggtccattcggacagcgacctggtcaagcgcgcgatccgcgacatctatcac
aaggatatcgaggaagtgctcgtcgagggcgacgagggctacaaggccgcgaagcagttc
atgaagctgctgatgcccagccacgcgcggcgcgtgaagcaatatgccgacccggtgtcg
ctctatcagcgctacggcgtcgaggatcagctcgccgggatgctcaatcccgtcgtccag
ctcaagtcgggcggctatctggtcatcaacccaaccgaggcgctggtgtcgatcgacatc
aactcgggccgttcgacgcgcgagcataatatcgagcagaccgcgctcaacaccaatctg
gaggccgcgcacgagatcgcgcgccagctgcgcctgcgcgacatggcggggctgatcgtc
atcgacttcatcgacatggatcacggctcgaacgtccgcaaggtcgagcgtgcgatgaag
gacgcgctgaagaacgaccgcgcccgcatccagatcggccgcatctcgggcttcgggctg
atggagatgagccgccagcgcctgcgcaccggcgtgctcgaagcctcgacgcgcccttgc
ccgcattgtgagggcaccgggctcgtccgcaccgccagctcggccggcctatcggcgctg
cgcctgatcgaggaggaagcagcgcgcggcaagggcagccggatcacgctgcgcgcgagc
caggaagcgaccttctacctgctcaacgaaaagcgccgcgaactgcgcgagatcgaggaa
ctctacggcgtctcggtcgaaatcctgcccgacggcgagaccgagggcgcgcggatggtg
gtcgaggtcggcggtccgccgcccacgcagcagcgcagcttcgccccgatcgtcgagatc
gaggaagaggaagacgagagcttcgacgatgagaccgccgaggaggacgaggaggaacgc
gccgatcgtccgcacgacgaaggcgatggcgacggccgcaagcgccgccgccgccgccgc
cgcgggcgccgcggacgtcgcgacgacgaaaatggcgaaagcggcgagaatggcgacgcc
ggcgatgccgataccgacgcggaagcggacatcggaacggcggccgaatcggctgacgtc
gagccggcggaagccgaagcgcctgccgaggctccggccgacgaagcggaagccaagccg
cgccgtcgccgcggcggacgcggccgcaagaaggccgaggccgccgacgagggcgtgacc
gaagccgcgccggtcgaagcggaagctcccgaagccgaagcgcccgagcccgtcgccgtc
gaagccgaggtcgaggccgaagcgccggccgccgaagagaagccgaagcgcaagcgcgcg
ccgcgcaagcccaaggctgctccggtcgaagcccccgccgaaaccgaagccgccgaagcc
cccgccgccgcgcccgaagcgacgctgccggtggaagccgaagccaagcccgcgccgaaa
aagcgcgcgagccgcagcaagaaggctgtcgccgccgccgaagccacccctgcggaaacc
gccgaggctcctgtcgcggcgcccgaacgcgaggccgagccggcgaccgtcgccgacgag
ggcgctctcgacgaaggcgcgctcgacgaagccacgggcgagccgcgtcgcggctggtgg
cagcgtaccttcggcaactga
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