Sodalis glossinidius: SG1052
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Entry
SG1052 CDS
T00316
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sgl
Sodalis glossinidius
Pathway
sgl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SG1052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgl03019
]
SG1052
03009 Ribosome biogenesis [BR:
sgl03009
]
SG1052
Enzymes [BR:
sgl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SG1052
Messenger RNA biogenesis [BR:
sgl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SG1052
Ribosome biogenesis [BR:
sgl03009
]
Prokaryotic type
rRNA processing factors
SG1052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
BAE74327
UniProt:
Q2NU48
LinkDB
All DBs
Position
complement(1753709..1757272)
Genome browser
AA seq
1187 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPPQYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLELPDSMGLIVRTAGVGKSADAL
QWDLAFRLKHWQAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLDLA
KEHIASLGRPDFTSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARSTRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NCLRESVRQDRARIQIGRISRFGLLELSRQRLSPSLGESSHHVCPRCGGTGTIRDNESLS
LSILRLIEEEALKENTHEVHAIVPVPIASYLLNEKREAVNAIEKRQGGVQAIIVPNDQMQ
TPHYAVLRVRKGEEAPTLSYLLPQLHEAEMTQPSEEPASDRKRPEQPALAAFVMPDPPLV
SEKPATVDASSVPAAPAVSAASAGASRGLFGRLVDGFKSLLGTPAPQQETDTAKAVVVEA
PAEAETPRRQERQDRRGQRRQGGRRDRNGEPVRAGQENRQLRDGRDDPRRKRSQTLNETD
TASDIVEETAQEEQVQPRREPRQDRQRRRQQEPKAQTAEQEIKALPAAVTESDGGNASDE
DDKPIQAQPRRQRRALNRKIRVGDRPTLPAAAESATAAFNAAVESQDDNDSNDVLQDKND
VALDASNADAGRNGNEAGLPRRSRRSPRHLRVSGQRRRRYRDERYPLSSPVPLTSAVVSP
EMASGKVWVSYPITPIEQPEQDALTDVAGGFQTAEVADAAEQQPQTAFAATVAGGTVTVS
EALPPTTLVPQDPSPAQEAAADEVPPVIAPDDRQVAQRQIEQAEPAAVSAVASTAADLSQ
ASAQPNDAFATPEATHPSDPVRGAETAQLPVEPCVEAHSAASSQPAASHGEEHPADPTPA
SQPTASCGEERPASLAPASEPAVTVEVQRPEETGNAIVASGAAASSDAALPPVVSTADSE
THGMGQTTPSAAAQDAARHAQPPVSTPLAQDGQPLPATPKAPATRFKHHASAPMTKAPAP
AYTPSPPPISDWQRPDYRFDGRGGAGGHAADHQATAPATRPGTPDPL
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcaacaggaagagttgcgcgtcgctctggtagat
ggccagcggctgtatgacctggatattgaaagccccgggcatgagcaaaaaaaagccaat
atctacaagggtaaaatcacccgtattgaacccagcctggaagcagcgtttgtggattat
ggcgcagagcgccacggtttccttccccttaaagaaatttcacgcgagtattttcctcct
caatattcttcccacggcagacccaatatcaaggacgtgctgcgcgaaggccaggaagtc
atcgtacaggtcgataaagaggaacggggtaataaaggcgcagcgctgaccacttttatc
agcctggccggcagttatctggtgctgatgccgaacaatccgcgcgcgggcggcatatca
cgccgtatcgagggtgatgatcgcaccgagctgaaagaagccttgtcctcccttgagctt
cccgacagcatgggacttatcgtccgcaccgccggcgtcggcaagtcggccgacgcgctg
caatgggatctggctttccgcctcaaacattggcaggcgattaaaaaggctgctgaagga
cgcccggcgccttttctgatccaccaggaaagtaatgttattgtccgcgccttccgcgat
tatttgcggccggatatcggcgaaattctgatcgataatcccaaagtactggacctggcc
aaagagcatattgcttcactgggtcgccctgattttactagcaaaattaagctttacagt
ggagaaattcctctgttcagccactaccagatcgaatcacagattgaatctgccttccag
cgtgaagtgcggctgccctccggtggctccattgtcatcgatactaccgaggcgttgacc
gccattgatatcaactccgcgcgctcaacccgcggcggcgatattgaagaaaccgctttc
aataccaaccttgaggcggcggatgaaatcgcccgccagctgcgtctgcgcgacctgggc
ggtttgatcgttatcgactttatcgatatgacgccggtgcgccaccagcgcgaagtggaa
aattgcctgcgtgaatcggtccgtcaggaccgtgcccgcattcaaatcgggcgcatttcc
cgcttcggcctactggagctatcccgtcagcgtctgagcccgtcgctgggtgaatcgagc
catcacgtctgcccccgctgcggcggtaccggcaccattcgtgataacgaatccctttct
ctttccatactgcggcttatcgaagaagaggcgctaaaagagaatacccacgaagtgcac
gccatcgtgccggtgcctatcgcctcttatttgctgaacgagaaacgcgaagccgttaac
gccattgaaaaacgtcagggcggcgtccaggcgattatcgtgcctaacgatcaaatgcag
accccgcattatgcggtactgcgcgtgcgcaaaggcgaagaagcccccaccctgagctat
ctgctgccgcagttgcatgaagcggaaatgacccaaccgtcagaggagcctgcctcggat
cgcaaacgccccgaacagccggcgttggcggcatttgtgatgcccgatccgccgctggtc
agcgagaaaccggctacggttgatgcgagtagcgtaccggcggcgcctgccgtcagcgcg
gcaagcgccggcgcatcgcgcggcctgttcggccgtctagtcgatggtttcaaatccctc
ctcggcacaccggcgccacagcaggaaacagacaccgccaaagcggtagtcgtcgaggca
ccggccgaggcggaaacgccgcgtcgccaggagcgtcaggatcgccgcggtcaacgccgt
cagggcggccgccgtgaccggaatggcgaaccggtccgcgccggtcaggaaaaccgtcag
ctccgcgatggccgtgacgatccgcgccgcaagcgttcgcagacccttaatgaaacagac
acggcaagcgacattgttgaagaaacagcgcaggaagagcaggtccagccgcgtcgcgaa
ccacgtcaagatcgtcagcgccgacgtcaacaagagccgaaagcgcagaccgcagagcag
gaaataaaagcgttgcctgccgccgtgacagagtcagacggcggcaacgcctccgacgag
gacgataagccgattcaggctcagccgcgccgtcagcgtcgcgcattgaatcgcaaaatc
cgcgtcggcgatcgacccacccttcctgccgccgcggaaagcgccaccgccgcgtttaat
gcggcggtagaaagtcaagacgacaatgatagtaacgacgtcctgcaagacaagaatgac
gtcgcgctcgatgccagcaatgccgatgccggacgtaacggtaacgaggcgggtttgccg
cgccgttcacggcgttccccgcgtcatctgcgcgtaagcggccaacgccgccgccgttac
cgcgatgaacgttatccactctcgtcgccggtaccgcttaccagcgcggtcgtgtcgccg
gaaatggcctcgggtaaagtgtgggtcagctatcccatcacgcccatcgagcagccggaa
caagacgcgctcaccgatgtggccggtggcttccagaccgcagaggtggctgacgccgca
gagcaacagccacagacagcatttgccgcgacggtagcaggcggaacggtaacggtcagc
gaagcgctaccgcccaccacgctggtcccgcaggatccctcaccagcacaggaagctgcc
gctgatgaggtgccaccggtcatcgcccccgatgaccggcaagtggcacaacgacagatt
gagcaagccgagccggccgccgttagcgccgtggcgtcaacggccgcagatctgtctcaa
gcatctgcacagcccaatgacgcctttgccacgccggaggccacgcatccgagcgacccc
gtccgtggggccgaaacggctcagctgccggttgagccgtgcgttgaggcgcattccgcc
gcgtcgtcccagcctgcagcatctcacggtgaggaacaccccgccgatccaacgccagcc
tcccagcctaccgcatcgtgcggcgaggaacgccccgccagtctggcgccggcgtccgag
cctgccgtaacggtcgaggtgcaacgtcctgaggaaacgggcaatgctatcgtcgcgtcg
ggggccgctgcgtcctctgacgccgcactcccccccgttgtgtcgacggcggacagcgag
actcacggcatggggcaaaccacgccttctgccgcagcccaagacgccgcacgtcacgcg
cagcctcccgtcagcacgccgctggcgcaggacggacagccgttaccggcaacgcccaaa
gcccctgccacgcgctttaagcatcacgccagcgcaccgatgaccaaagcacctgcgccg
gcctatacgccttcgccgccaccgatcagcgactggcaacggccggactaccgcttcgac
ggccgcggcggcgccggcggtcacgccgcggaccatcaagcgaccgcaccggcaacccgt
ccgggcacgccggacccgctgtaa
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