Streptomyces aurantiacus: GCM10017557_55400
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Entry
GCM10017557_55400 CDS
T07085
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sgm
Streptomyces aurantiacus
Pathway
sgm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCM10017557_55400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgm03019
]
GCM10017557_55400
03009 Ribosome biogenesis [BR:
sgm03009
]
GCM10017557_55400
Enzymes [BR:
sgm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GCM10017557_55400
Messenger RNA biogenesis [BR:
sgm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GCM10017557_55400
Ribosome biogenesis [BR:
sgm03009
]
Prokaryotic type
rRNA processing factors
GCM10017557_55400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
FakA-like_C
Motif
Other DBs
NCBI-ProteinID:
BCL30681
UniProt:
A0A7G1P7R4
LinkDB
All DBs
Position
6351715..6355998
Genome browser
AA seq
1427 aa
AA seq
DB search
MLEPTEPTGPAKGSDNSTPSDTLPPRRRRRAASRPAGPPSANAEGAAVTETTAPAENTAP
AIPAGAFGVPEETAAEATAPGADEPVQAAADEAAPAPRTRRRATRRATAPAGAPGAEAAE
ATTAAPVAQAESLAQTEPETPAAAETDGEAAPAPRARRRATRRATAPTGTPQTADAEAAP
VTVVTSASGGAAEAPAAAEASEETSGAPEETPAVEADAAPAPRTRRRATRRATAPAGAPQ
AETETPEPASDEAAAEPARRATQPKAERAETPTATEPTEAVVRDERREAPVAAAKNDRSA
ETETPADAEDTTPRRARRRATRKAAGGFSAPAPRKAARAEEESGRRPARPAVAVFQAPVF
TEPMFQTPERAAAAAAAEAAEETEEVAEPVQEAAPAVVEEETGGPRRRRRRKAEEPAAPA
ERAPVERAPEAEEPVDEESTEEESAEDAADGDDNEETGSRRRRRRGGRRRRRGESADADD
EFAGEQDERGEQAAGAGQGTQQVQETQQVQEAQDAEDTAEQVEEDAADAEDEHEDAGGSS
SSRRRRRRRRRAGDSSGEVESGAGDSDPERTVVKVREPRKKDERSHDGSDEVQSIKGSTR
LEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQSGERTQIGVLEDDVLVEH
YVNKEESTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALGMANGPRRI
ESALKSGQSVLVQVTKDPMGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARL
KTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIEKKAKSGGSSNAPTLLYG
EPDMTVRVVRDIFNEDFTKVIVSGDEAWNTIHGYVAHVAPDLADRLSRWTSEVDVFATYR
IDEQLAKALDRKVWLPSGGSLVIDKTEAMIVIDVNTGKFTGQGGNLEETVTRNNLEAAEE
IVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTR
KRVGQGLLESFSETCVHCNGRGVIVHMEQPTAAGGGGGGKRKKRGRGGAEQTHEHEHTYE
PESADAIEPTESAAEVTEEVAESVELPESALAEARLDDFVPDEDLYSSAAEAEAAATRGR
SRRRASRRASAPAGAPRSESRRSERAERAERAERRGEVPTAQSVTAEDEVARPVQQEPAA
VAQTEPVAAEDPVVEAPAAAEAPAATDAAPKGRTRRRATRKVSAPAGSPKAAQDAVVTVT
EPVAPPAAPVAPEPEVERAAEPAATTEQPVADSAAPTRPRRRAVRKATAPTSSADTAVVV
VPSASPEAPAQEAEAPVEAPAESSGAASDAGDEAPAKKTARKAAKKAPAKKAAAKKTTTA
AKKTAAKKTTAKKATKTAKTAAKSTSKKTAAAEQQTPSTVTSSTDED
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgcttgagccgaccgaacccactgggcccgccaagggctccgacaacagcacccccagc
gacacgctgccaccacgccggcgccgtcgcgccgcttcccgccccgcgggacccccctcg
gcgaacgccgaaggtgccgccgtgacagagaccacggcaccggcggagaacactgcgccg
gccataccggccggtgcctttggggtcccggaggagacggccgccgaggccaccgccccg
ggcgccgacgagcccgtacaggcagcggccgacgaggccgcccccgccccgcgtacgcgc
cgtcgtgccacccgccgggccacggcgcccgccggtgcgccgggcgccgaagccgcagag
gcaacgaccgccgcacccgtcgcgcaggcggagtccctcgcgcagacggagcccgagaca
cccgccgccgccgaaaccgatggcgaggccgcccccgctccccgcgcgcgccgtcgtgcc
acgcgccgggccaccgcgcccacgggtacgccgcagacggccgacgccgaagccgctccg
gtgaccgttgtgacgtccgcgtccggcggggccgccgaggccccggccgccgcggaggca
tccgaagagacgtccggggcacccgaagagacaccggccgtcgaggccgacgccgccccc
gctccgcgtacgcggcgtcgtgccacgcgccgggccaccgcgcctgccggcgccccgcag
gcggagaccgagacccccgagccggcgtccgacgaggccgccgccgagcccgctcgccgc
gccacccagccgaaggcggagcgcgccgagacccctaccgcgaccgagcccaccgaggcc
gttgtccgcgacgagcgcagggaggcccccgtggccgctgccaagaacgaccggtccgcc
gagaccgagacccccgccgacgcggaggacaccaccccgcgccgtgcccgccgccgggcc
acccgcaaggcggccggaggcttctccgcgcccgcaccgcgcaaggccgcgcgggccgag
gaggagtcgggccgacgccccgcgcgtcccgccgtcgccgtcttccaggcgccggtcttc
accgagccgatgttccagacgccggagcgcgcggcggccgccgccgcggccgaggccgcc
gaggagaccgaggaggtcgcggagccggtccaggaggccgcccccgcggtcgtcgaggag
gagaccggcggaccgcgcaggcgccgccgcaggaaggccgaggagcccgccgccccggcg
gagcgggccccggtcgagcgggcccccgaggccgaggagcccgtcgacgaggagtccacc
gaggaggagtccgccgaggacgccgccgacggtgacgacaacgaggagaccggttcgcgc
cgccgtcgccgtcgtggtggccgtcgccgccgccggggcgagtccgccgacgcggacgac
gagttcgccggtgagcaggacgagcgcggtgagcaggcagccggggccggccagggcacc
cagcaggtccaggagacccagcaggtccaagaggcccaggacgccgaagacacggccgag
caggtcgaggaggacgccgcggacgcggaggacgagcacgaggacgccggcggctccagc
agcagccgtcgccgccgtcgccgtcgccgccgcgccggtgactcctccggcgaggtcgag
tcgggcgcgggcgacagcgaccccgagcgcacggtcgtcaaggtccgcgagccccgcaag
aaggacgagcggtcccacgacggctcggacgaggtgcagtccatcaagggctcgacccgt
ctggaggccaagaagcagcgccgccgtgaagggcgcgagcagggccgccgccgcgttccg
atcatcaccgaggccgagttcctggcccgtcgtgaggccgtcgagcgcgtgatggtcgtc
cgccagagcggcgagcgcacccagatcggcgtccttgaggacgacgtgctcgtggagcac
tacgtcaacaaggaggagtcgacctcgtacgtcggcaacgtctacctgggcaaggtccag
aacgtgctgccgtcgatggaggccgccttcatcgacatcggcaagggccgcaacgccgtg
ctgtacgccggtgaggtcaacttcgaggcgctgggcatggccaacggcccccgccgcatc
gagagcgccctgaagtcaggacagtcggtcctcgtgcaggtcacgaaggacccgatgggc
cacaagggcgcccgtctgacgagccaggtctcgctccccggccgctacctggtctacgtg
cccgagggctcgatgaccggcatcagccgcaagctgcccgacaccgagcgcgcccgcctg
aagaccatcctcaagaagatcgtgcccgaggacgcgggcgtcatcgtgcgcaccgccgcc
gagggcgcgagcgaggacgagctgcgccgtgacgtcgagcggctccaggcgcagtgggag
gacatcgagaagaaggcgaagagcggcggcagttcgaacgcgccgacgctgctgtacggc
gagccggacatgaccgtccgtgtcgtccgcgacatcttcaacgaggacttcaccaaggtc
atcgtcagcggcgacgaggcgtggaacaccatccacgggtacgtcgcccatgtcgcgccc
gacctggccgaccggctgtcgaggtggacctccgaggtcgacgtcttcgcgacgtaccgg
atcgacgagcagctcgccaaggcgcttgaccgcaaggtctggctgccgagcggcggttcg
ctggtcatcgacaagaccgaagcgatgatcgtgatcgacgtcaacaccggcaagttcacc
ggtcagggcggcaacctcgaagagacggtcaccaggaacaacctggaggcggccgaggag
atcgtgcgccagctgcggctgcgcgacctcggcggcatcgtcgtcatcgacttcatcgac
atggtcctggagtccaaccgggacctggtgctgcggcgcctcctggagtgcctgggccgc
gaccgtacgaagcaccaggtggccgaggtcacctcgctcggcctggtccagatgacccgc
aagcgggtcggccagggcctgctggagtcgttctcggagacctgcgtccactgcaacggc
cgtggcgtgatcgtgcacatggagcagccgaccgccgcgggtggcggcggcggtggcaag
cgcaagaagcgcggccgcggcggtgccgagcagacccacgagcacgagcacacgtacgag
ccggagtcggccgacgcgatcgagccgaccgagtcggctgccgaggtcaccgaggaggtc
gccgagtccgtcgagcttcccgagtccgccctggcggaggcgcgcctggacgacttcgta
ccggacgaggacctgtacagcagcgccgccgaggcggaggccgcggccacgcgcggccgt
tcgcgtcgccgggcgagccggcgggcatcggccccggcgggtgcgccgaggtccgaatcc
cgcaggtcggaaagggccgagagggccgagagggccgagcgcaggggcgaggtgccgacc
gcgcagtccgtgacagcggaggacgaggtcgcgcgccccgtgcagcaggagccggccgcg
gtcgcgcagaccgagcccgtcgccgccgaggacccggtggtcgaggctccggccgccgcc
gaggccccggccgccaccgacgccgctcccaaggggcgtacgcgccgtcgggcgacccgc
aaggtgtccgcgccggccggttcgcccaaggcggcacaggacgccgtggtgacggtcacc
gagccggtcgccccgcctgccgcgcccgtcgcgcccgagcccgaggtggagcgggccgcc
gagcccgccgccacgacggagcagcccgtcgccgacagcgccgccccgacgcgtccgagg
cgccgtgcggtccgtaaggccaccgcgccgacctcgtccgcggacaccgccgtcgtggtc
gtgccgtcggcgtcgcccgaggccccggcgcaggaagccgaggcgccggtcgaggccccc
gcggagtcgtccggtgcggcgtccgatgcgggcgacgaggctccggccaagaagacggcc
cgcaaggcggccaagaaggcgcccgcgaagaaggccgccgcgaagaagacgacgacggcg
gccaagaagacggcagccaagaagaccacggccaagaaggcgaccaagaccgccaagacg
gccgcgaagtcgacgtcgaagaagaccgcggccgcggagcagcagacgccgtccaccgtc
acgtcctccaccgacgaggactga
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