Sinorhizobium sp. CCBAU 05631: SS05631_c10850
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Entry
SS05631_c10850 CDS
T05069
Name
(GenBank) Cytoplasmic axial filament protein CafA and Ribonuclease G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sino
Sinorhizobium sp. CCBAU 05631
Pathway
sino03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sino00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SS05631_c10850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sino03019
]
SS05631_c10850
03009 Ribosome biogenesis [BR:
sino03009
]
SS05631_c10850
Enzymes [BR:
sino01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SS05631_c10850
Messenger RNA biogenesis [BR:
sino03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SS05631_c10850
Ribosome biogenesis [BR:
sino03009
]
Prokaryotic type
rRNA processing factors
SS05631_c10850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ASY56035
UniProt:
A0A249NR73
LinkDB
All DBs
Position
complement(1055942..1058731)
Genome browser
AA seq
929 aa
AA seq
DB search
MAEKMLIDASHSEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEEARREDDVEPVETADEQTVAPTRDE
APAEEAAETVEPTETTEPETEVKAEAEKPKAKPKRTRRAKAKASEQKEEAQGDAEASDEG
SSGEMAAMVDVDSISEDVDARRRRDDDDDDDDGHDGEKEIIESVGAEDAMEEVPDRQVRK
PRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKI
TNLQDRKRLKEIARGLDVPQGMGVILRTAGANRTKVEVKRDFEYLMRLWENVRTLTLNST
APCLVYEEGSLIKRSIRDLYNKDISEIIVSGEEGYKEAKSFMKMLMPSHAKVVQPYRDVH
PIFSRSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREHSIEDTALQTN
LEAAEEVARQLRLRDLAGLVVIDFIDMEEKRNNRAVEKKLKDCLKNDRARIQVGRISHFG
LLEMSRQRIRASVLESTMQSCPHCNGTGHVRSQSSVALHVLRGIEEHLLKNTTHDIAVRT
IPEIALYLLNQKRGTITDYERRFGVSIIIEADAHVGAQHFAIDRGDPVENPVKIEQLLHF
EPEPEEEEEEDIVIEEDLDEEEAEETAAERPGQPKAQASDDQGGRKRKRRRRRRGKGAGH
GPESVAAEAGDALDGAADEGDESEDEGEAQDALTADGDQKRKRRRRGKRGGRRNRPEAEG
EAALAAESDDEPADAEEAADANDADAAAAAAVEQVVNAASVKAETPAAEAKPAKPKRSRK
KAVAAEAPAENADTAAEQAVEAQPDETGPAQVEEAVADLEAGKPARSNRDLTTIASEPVV
TSNVAKADSSEEEAAKPKKGGWWQRRGFF
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaaaatgcttatcgatgcgtctcactcagaggagacgcgcgtcgttgtcgtt
cgcgggaaccgcatagaagaattcgatttcgaatcggaacataagaagcaaatccgcggc
aatatctatctggccaaggtgaccagagtggagccgtcgctgcaggcggccttcgtcgat
tatggcggcaatcgccacggcttcctggccttcgccgaaattcaccccgactactatcag
atccccctcgccgaccgtcaggcgctgttgaaggcggaagccgaagaggcccgccgcgag
gacgacgtcgagccggtcgagaccgcagacgagcaaaccgtcgcgccgacaagggacgag
gctccggctgaagaagccgccgagacagtcgagccaactgagacgaccgaaccggaaacg
gaagtcaaggcagaggcggagaagccgaaggccaagccgaagcgcacgcgccgggcgaaa
gccaaggccagcgaacaaaaggaagaggcgcagggcgacgccgaggcgagtgatgagggc
agcagcggcgaaatggccgcgatggtcgacgtcgactcgatctccgaggacgtcgatgcg
cgccgccgccgcgacgatgatgacgacgatgacgacggccatgacggcgagaaggaaatc
atcgagtctgtcggcgcagaagatgcgatggaagaggttccggaccggcaggtccgcaag
ccgcgaaagcagtaccgcatccaggaagtgatcaagcgccggcagatcctgctcgtccag
gtcgcgaaggaagaacgcggcaacaagggcgcggcgctcaccacctatctttcgctcgcg
ggccgctattcggtgctgatgccgaacacggcgcgcggcggcggcatctcccgcaagatc
accaacttgcaggaccgcaagcgcctcaaggaaatcgcccgcggtctcgacgtgccgcag
ggcatgggcgtgatcctgcgcaccgctggcgccaaccgcaccaaggtcgaggtcaaacgc
gacttcgaatatctgatgcggctgtgggagaacgtccgcacgctgaccttgaactccacc
gccccctgcctcgtctatgaggaaggcagcctgatcaagcgttcgatccgcgacctctac
aacaaggatatcagcgagatcatcgtctccggcgaagagggctacaaggaagccaagagc
ttcatgaagatgctgatgccgagccacgcgaaggtcgtgcagccctatcgcgacgtgcat
ccgatcttctcgcgttccggcatcgaagcccagctcgaccgcatgctgcagccgcaggtg
acgctgaagtcgggcggctatatcatcatcaaccagaccgaggcgcttgtctcgatcgac
gtgaactccggtcgctcgacccgcgagcattcgatcgaggataccgcgctgcagaccaac
ctggaggcggccgaggaagtcgcgcgccagctgcgtcttcgcgaccttgccggcctggtg
gtcatcgacttcatcgacatggaagaaaagcgcaacaaccgcgccgtcgagaagaagctt
aaggactgcctgaagaacgaccgggcgcgcatccaggtcggccgcatctcgcatttcggc
ctgcttgaaatgtcgcgccagcgcatccgcgcctcggtgctcgaaagcacgatgcagtcc
tgcccgcattgcaacggcacgggccacgttcgctcgcagtcttccgtcgcgctgcatgtg
ctgcgcggtatcgaggaacatctgctaaagaacaccacgcacgacatcgcggtccgcacg
atcccggaaatcgcgctctaccttctcaatcagaagcgcggcacgatcaccgactatgag
cggcgcttcggcgtctcgatcatcatcgaggcggacgcgcatgtcggcgcccagcacttc
gcgatcgaccgaggcgatccggtcgagaatccggtgaagatcgagcagcttctgcatttc
gagccggagccggaagaagaagaagaagaagacatcgtcatcgaggaggatctggacgag
gaggaagcggaagagaccgcggccgagcgtccgggacagccgaaggcgcaggcctccgac
gaccagggcggccgcaagcgcaagcgccgtcgccggcggcgcggcaagggtgccggccac
ggaccggaatcggtcgcggcggaagccggagacgcgcttgatggcgcggctgacgaaggc
gacgagtccgaggacgaaggcgaggcccaggatgccttgacggcagacggggatcagaag
cgcaagcgtcgccgtcgcggcaagcggggcggccgccgcaaccggccagaagccgaaggt
gaggccgctcttgctgcagagtccgatgacgagccggccgatgccgaagaggcagcggac
gccaacgacgccgatgcagctgccgccgcggccgtcgaacaggtcgtaaatgcggcgtct
gtcaaggccgagactcccgctgccgaagccaagccggcgaaaccgaagcgcagccgcaag
aaagccgtggccgccgaggcaccggcggaaaatgccgacacggcggccgaacaggctgtc
gaagcgcagccggatgaaaccggtcctgctcaagtcgaggaagcggttgcagacctggag
gccggcaagcccgcacgctccaatcgggatctgacgacgattgcttccgagcccgtggtc
acatcgaatgtggccaaggccgacagcagcgaagaagaggcagccaagccgaaaaaaggc
ggctggtggcagcgccgcggcttcttctga
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