Scomber japonicus (chub mackerel): 128361361
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Entry
128361361 CDS
T09718
Symbol
pdgfra
Name
(RefSeq) platelet-derived growth factor receptor alpha
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04010
MAPK signaling pathway
sjo04020
Calcium signaling pathway
sjo04144
Endocytosis
sjo04510
Focal adhesion
sjo04540
Gap junction
sjo04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
128361361 (pdgfra)
04020 Calcium signaling pathway
128361361 (pdgfra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
128361361 (pdgfra)
09144 Cellular community - eukaryotes
04510 Focal adhesion
128361361 (pdgfra)
04540 Gap junction
128361361 (pdgfra)
09142 Cell motility
04810 Regulation of actin cytoskeleton
128361361 (pdgfra)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
sjo01001
]
128361361 (pdgfra)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
sjo04090
]
128361361 (pdgfra)
Enzymes [BR:
sjo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
128361361 (pdgfra)
Protein kinases [BR:
sjo01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
128361361 (pdgfra)
CD molecules [BR:
sjo04090
]
Proteins
128361361 (pdgfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
ig
Ig_2
VEGFR1-3_N_Ig-like
V-set
VEGFR-1-like_Ig-like
C2-set_2
Motif
Other DBs
NCBI-GeneID:
128361361
NCBI-ProteinID:
XP_053177771
LinkDB
All DBs
Position
7:10086284..10103310
Genome browser
AA seq
1473 aa
AA seq
DB search
MIMDGVRMYVVFGVILLVLVTVTCGLSPPKIISNEDEFILKPNSLFNISCTGKRNVVWQE
PLPKNVLVYPGYYTATLFIDNATVENTGYYMCTFETQEGDVEVDSEDENEAGIYVFVPDP
QAPFVPEFPENLVVPMDNTGVPISCRVSDPHSHVILRSVPSGREIPAFYDNKMGFFQSLS
PGQYQCETIVNGQTVTSVIYTVEDNVSAEVEDFDVDVKASEETVRAGQPFNITCTAPAGL
GFQQQWVHLKKQALDAVQMKQTLPDRVIYILSFPHATSQDSGIYECSITHETSGEVRVST
VAINVFEENSFVALDHSGIQPMELVSLLEETEFTILINAYPAPKVTWLKDGKPIPENYYL
LTKTSQIEGNRYQSILTLRQPLEKDNGNYTITAVCGSRIARFSFTLKVKASTSVMFTPSS
APVLLPHEEELVVPLSTAFTLTCRGEAKLAWETPFDVPEQTQEDSSGLFVTTITVDTATA
MHTGYYTCFYIRNTTEETEDSSIYIYVPDPDVPFVPSPVPFGNHVLSDRGEMEIQCRVSD
PSANVTLINVDRQEPVPNVYDSKRGALGVFTAGTYVCKALINGEERYSGEYIVHGWAGGG
ALHVELTAKRTALLVGDSITVNCLARGSEILEDHWKYPGKLANRAIKTVHENKRDQEILY
TLTIPQASAKDSGIYACSITDVVSNESQTKQLAVTVYENEFMNFRPEFNVHESAELNEVR
GFRAEIDSFPSARVTWLKDGLPLSYVTAEISSSLEQLSETRYLSVLTLIRAKEEDSGNYT
MRVENGNQSRSVSFNLQVKVPAVIVDLMDIHHGSATGQSVVCIVGGHPTPEVEWFVCKNI
KHCANDSSYWMPLSANSTEVTIDSHINEENYLESQVMFGHLENTLAVRCLTRNEMATVSR
EVKLVSNGPHPELTVAAAVLVLLVIVIISLIVLVVIWKQKPRYEIRWRVIESVSPDGHEY
IYVDPMQLPYDSRWEFPRDRLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPT
ARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYGDLVNYLHKNREN
FLSLNPEKTKKELDIFGINPADESSRSYVILSFESKGDYMDMKQADNTQYVPMLEMNNAS
KYTDIQMSNYDHPPSQKDSNEGEMDNLLSDEKNEGLTTTDLLSFTYQVAKGMEFLASKNC
VHRDLAARNVLLSQGKIVKICDFGLARDIMHDNNYVSKGSTFLPVKWMAPESIFDNLYTT
LSDVWSYGILLWEIFSLGGTPYPGMVVDSSFYNKIKSGYRMSKPEHAPHDVYEMMMKCWN
SEPEKRPCFLGLSDTVASLLPSSYKRHYEKVNHEFLKSDHPAVTRVCLENDDAYIGITYK
NQGKLKDRESGFDEQRLSSDSGYIIPLPDLDPISDDEYGKRNRHSSQTSEESAIETGSSS
STFAKREGETLEDITLLDEMCLDCSDLVEDSFL
NT seq
4422 nt
NT seq
+upstream
nt +downstream
nt
atgatcatggatggggtgaggatgtatgtcgtctttggggttatattgttggtgttggtt
acagttacctgcggactgtcaccaccaaagattatttccaatgaagacgagttcatcctg
aagccaaactccttgttcaacataagctgcaccggtaaaagaaatgtggtttggcaggaa
cccctgcccaaaaacgtcttagtttatccaggatactacacggcgacgctctttattgac
aatgcaactgttgaaaacaccggctattatatgtgcacgtttgaaacccaggagggtgat
gtggaggttgactcggaagacgagaatgaagctgggatatatgtctttgttccagatccc
caggctccatttgttcctgagttccctgaaaacttggttgtccccatggacaacactgga
gtccccatctcctgccgtgtgtctgacccccactctcacgtcatcctgaggagtgtcccg
agtggacgggagatacctgccttctacgacaacaagatgggcttcttccaaagcctctcc
cctgggcagtaccagtgtgaaactattgtgaacggccagacagtcacaagtgttatttac
actgtagaggacaatgtctcagcagaggtggaggacttcgatgttgatgtaaaagccagc
gaggagacagtgagagcggggcagcctttcaacatcacctgcaccgctcctgctggactg
ggctttcagcagcagtgggtccaccttaaaaaacaggctctggatgctgttcagatgaaa
cagactcttcctgaccgggtcatctacatcctcagtttcccacatgccacctctcaggac
agtggcatctacgagtgctccatcacccacgaaaccagtggagaggtcagagtcagcacg
gtggccatcaacgtcttcgaggagaactcctttgtggcactggaccacagtgggattcaa
ccaatggagcttgtaagccttttggaggagacagagtttaccatcctcattaacgcctat
ccagcccccaaagtgacatggctgaaggacggcaaacccattccagagaactactacctc
ctcaccaaaactagccaaattgaagggaataggtatcaaagcattctgacattacggcaa
cctctggagaaagacaacgggaattataccatcacagctgtctgtggctctcgcattgct
cggttctccttcaccctcaaagtgaaagcctccacctcagtcatgttcacaccatcctca
gcccctgtgctgctgcctcacgaagaggaattggtggttcccctctccactgctttcacc
ttgacctgtcggggagaggcaaaactagcctgggagacgccgttcgatgttcctgagcaa
acgcaggaggacagcagtggcctgtttgtcaccaccatcactgtcgacactgccactgcg
atgcatactggctactacacatgcttttacattagaaataccaccgaggagaccgaggac
agcagcatctacatctatgtgccagatccagatgttccctttgttccatcaccggtgcct
ttcggcaatcatgttctgtccgaccgcggggagatggagatccagtgtcgagtgtctgat
cccagtgctaatgtgaccctgattaatgttgacagacaggagcctgtgcctaatgtttat
gacagcaagaggggcgctctgggcgtattcactgcaggaacctacgtttgcaaggccctc
ataaatggagaggaacgctacagtggggaatacatcgtccatgggtgggcaggtggtgga
gcgctgcatgttgagctaacagccaaaaggactgccctgttggtgggagattccatcaca
gtcaactgtctggctcggggatctgaaattctggaagaccattggaagtaccctggcaaa
ctggctaatcgtgctatcaagacagtgcacgagaataagagagatcaggagatcctttac
accctgacaatcccgcaggcctcagccaaagacagtggcatctatgcttgttccatcact
gatgttgtcagtaatgagagccagacaaagcaacttgctgttacagtttatgaaaatgaa
ttcatgaactttcggccggagttcaatgtccatgaatcagcagagctgaatgaggtccgg
ggtttcagggctgaaatcgactccttccccagtgcacgtgtcacttggctcaaagacggc
ctcccactcagctatgtgacagcagagatctcctccagcctcgaacagcttagcgagacc
aggtacctgagtgttcttacccttatccgtgcaaaggaggaggacagcgggaactacacc
atgcgagtggagaatggaaaccaaagtcgcagtgtcagctttaacctgcaagtcaaagtg
cctgcagtcattgtggacctgatggacatccaccatggctcagccacaggccagtctgta
gtatgtattgttggagggcatcccactcctgaggtggagtggttcgtctgcaagaacatc
aaacattgtgccaacgactcatcttactggatgccactttctgcaaactccacggaggtt
acaatcgactcacacatcaacgaggagaactacctggaaagccaggtcatgtttggccat
ctggaaaacacactggcagtacgctgtttgaccaggaatgaaatggccaccgtcagcagg
gaggtcaaactggtgtccaacggccctcacccagagctgactgtagctgctgctgtgctg
gtgctcctggtcattgtcatcatctcactcattgtcttggttgttatctggaaacagaaa
ccaagatatgagatccgctggagggtaatagagtctgtgagcccagacggccatgagtac
atctatgtggatcccatgcagcttccatatgattccagatgggagttcccccgtgacaga
cttgtgcttggtcgtatcctgggttctggagcctttggtaaagttgtagagggcaccgcg
tatggactcagccgttcccaacctgtcatgaaggtggcagtgaaaatgctgaaacccaca
gcacgctccagtgagaaacaggccctgatgtcagaactgaagatcatgactcatcttgga
ccgcacctcaatattgtcaacctgctgggagcgtgcaccaagtcaggccctatctacatt
atcactgagtactgcttctacggagacctggttaactacctgcacaagaacagggaaaac
ttcctcagcctgaacccagaaaaaacaaaaaaagagctggatatctttgggatcaaccct
gcagatgagagcagcaggagttatgtgatcctgtccttcgagagcaaaggagactacatg
gacatgaagcaggctgataacactcaatatgtccccatgcttgagatgaacaatgcctcc
aagtacacagacatccaaatgtctaactacgaccacccaccttctcaaaaagactccaat
gagggcgagatggacaacctgctgtcagacgaaaaaaatgagggcctcaccaccaccgac
ctgctcagctttacctaccaggtggccaaaggcatggagtttctggcttccaaaaattgt
gtgcacagggaccttgcagccaggaatgtcctcctctctcaaggcaagatagtgaagatc
tgtgactttggactggcaagagacatcatgcatgacaacaattatgtctccaaagggagc
actttcctgccagtgaagtggatggcaccagagagtatttttgacaacttgtacaccact
ctcagtgatgtttggtcctacggcatccttctctgggagatattctccttaggtggtacc
ccataccccgggatggttgtggactcaagcttttacaacaagatcaaaagtggatatagg
atgtccaaaccagaacatgcacctcatgacgtgtatgagatgatgatgaagtgctggaac
agtgagccagagaagaggccttgtttcctgggtctgagtgatactgtagcttcgttgctg
ccctccagctacaagaggcattacgagaaagtcaaccacgagttcctgaaaagtgaccac
cccgccgtgactcgggtgtgcctggaaaatgacgacgcctacattggcatcacctacaag
aaccagggcaagctgaaggacagggaaagcggatttgatgagcagcggctcagctctgac
agcggctacatcattcccctccctgacctggaccctatatctgatgatgaatatggaaaa
aggaacagacacagctctcagacgtccgaggagagcgccattgagacaggctccagcagc
tccacttttgcaaagcgtgagggtgagactctggaggacatcacactcctggatgagatg
tgtctggactgtagtgacctcgtggaggacagcttcctgtga
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integrated database retrieval system
