Breviolum minutum: v1.2.021296.t1
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Entry
v1.2.021296.t1 CDS
T04349
Symbol
symbB.v1.2.021296.t1
Name
(OIST) -
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
smin
Breviolum minutum
Brite
KEGG Orthology (KO) [BR:
smin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smin03016
]
v1.2.021296.t1 (symbB.v1.2.021296.t1)
Enzymes [BR:
smin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
v1.2.021296.t1 (symbB.v1.2.021296.t1)
Transfer RNA biogenesis [BR:
smin03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
v1.2.021296.t1 (symbB.v1.2.021296.t1)
Prokaryotic type
tRNA splicing ligases
v1.2.021296.t1 (symbB.v1.2.021296.t1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
LinkDB
All DBs
AA seq
509 aa
AA seq
DB search
MSEIKRSFNDEMGYLKREDTTCYSIRPGFVQGMNVPGKFYVNDQLERLMLDELRSFSRQS
NNAGGFLPAVKQIGNVAALPGIVKHSIGLPDIHSGYGFAIGNVAAFDMGLPEAVVSPGGV
GFDINCGVRLVRTNLLFSDVQPVKETLAQSLFDHIPVGVGSMGIIPTKEQDLEEALQIGI
DYSLREGYAWPEDKEHCEEYGRMLNADPGKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDE
IYDEFVAKKMGIDQKGQVCVMIHSGSRGLGHQVATDALVDMERAMTRDNIRTNDRQLACA
RIHSDEGQHYLKAMSAAANYAWVNRSSMTFLTRQAFAKVFNQSPEDLDMHVIYDVSHNIA
KVEEHFVDGTCKQLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVIVGGTMGTCSYVLTGTD
KGMRETFGSTCHGAGRALSRNKSRNNLDYGDVLKRLEDMGISIRVASPKLIMEEAPESYK
DVTQVVQTCHDAGISKKAIKLKPVAVVKG
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
cttgaagccacctgatcttccagcgcaacttagcgctgtgcttcactggaatttttttgc
gccccatcccgagaggcatgtcggagatcaagcgaagcttcaatgatgagatggggtatc
tcaagcgggaggataccacgtgctactccatccgccccggcttcgttcagggaatgaatg
tcccaggcaagttctatgtcaacgatcagcttgaacgcttgatgttggacgaactgcgaa
gtttttccaggcaatccaacaatgctggtggcttccttccagcagtgaaacagattggaa
acgtggcagccttgcctggaatcgtcaagcactccattggtttgccagacattcacagtg
gctatggtttcgccattgggaatgtggccgccttcgatatgggtttacccgaggcagtcg
tttcacctggtggtgttggttttgacatcaactgtggagtgcgcctggttcggacgaatc
tccttttttctgatgtgcagcctgtgaaggaaactcttgcacagtccctcttcgatcaca
tccccgtgggtgttggatccatgggaatcatcccaacgaaagaacaagacctcgaagagg
ctttgcagattggcattgactattctttacgagaaggatacgcatggcctgaagacaaag
agcactgtgaagagtacggcaggatgttgaatgcagatccagggaaagtctccagccgag
ccaagaagcgtggactaccacagttgggaaccttgggtgcagggaatcactatgcagaga
tccaggtggttgatgagatttacgatgagtttgtcgccaaaaagatgggcattgaccaga
aaggacaggtctgcgtcatgatccactcaggtagccgtggtttggggcaccaggttgcca
ccgatgcattggtcgacatggagagagctatgacccgtgacaacatccgaaccaatgatc
gacagctggcatgtgcaaggatccattctgatgaaggtcagcactacctcaaggcgatgt
ctgcagcagcaaactatgcatgggtaaaccgttcatccatgactttcttgacgcgtcagg
catttgccaaggtcttcaatcaatcgccagaagatttggatatgcacgtgatttatgatg
tgtcacacaacatcgccaaagtggaggagcatttcgtcgatggcacgtgtaagcagctgt
tggtccatcgtaagggttcgacccgagctttcccgcctcaccatccgttgatccctgtgg
attaccagctgacagggcaaccagtgatcgtcggaggaaccatgggcacttgctcttatg
tcctgactggcacagacaaaggcatgcgagagacctttggaagtacctgtcatggtgcag
ggcgtgcattgagccgaaataaatcgcgcaacaacttggattatggagatgtgctgaaaa
gactggaggacatgggaatttctatccgtgtggcctctcccaagctgattatggaagaag
cccctgaaagttacaaagacgtgacacaagtggtacagacatgccatgacgcaggcattt
ccaaaaaagccatcaagctgaagccggtggctgtggtcaaaggttaaggtgtgattattc
aagccattgactggatccaaaccgcagcagcagatgaaaatg
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