Stenotrophomonas maltophilia R551-3: Smal_2678
Help
Entry
Smal_2678 CDS
T00733
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
smt
Stenotrophomonas maltophilia R551-3
Pathway
smt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Smal_2678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smt03019
]
Smal_2678
03009 Ribosome biogenesis [BR:
smt03009
]
Smal_2678
Enzymes [BR:
smt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Smal_2678
Messenger RNA biogenesis [BR:
smt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Smal_2678
Ribosome biogenesis [BR:
smt03009
]
Prokaryotic type
rRNA processing factors
Smal_2678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
SE
Motif
Other DBs
NCBI-ProteinID:
ACF52378
UniProt:
B4SPV8
LinkDB
All DBs
Position
2986059..2989334
Genome browser
AA seq
1091 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRIFRIEPSLEAAFVEY
GGGRHGFLPLKEISRDYFQAGVDHNKAGIRELLREGQEIVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKDALDKLNIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLNVWRAIAEAALSKPAPFLIYQESRLIVRALRDYLRADIGEILVDTEEMYEHAK
EFMQQVMPQTLRKLKHYKDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASNKHQREVENR
LANALKYDRARVQVGRISRFGLLEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHEAPIVIVADEQLHTPH
YAVTRLRDNELGEESGRPSYQRGTPRKLPVHALTKGQLNIPPPMVTQVKHNSPAPVREEV
EPAAAPAPAPVAAVAPAAAASGGVVGWLKRIFGGEPAPAPAPAPAARQPQQDGGRRDRNK
DRNKDRKDRRDDSRGNGNAQQQKDGGNRKDRGEQRKDGRQGGNGANPGTGNAQQPQQQGK
QKDQQKDGQQQPQQNKPRNEPQAQNPQQQPKLKQPRQPRPQQDGDKPAEKPQRNAAEAST
EVVTAAAAVTATAVVANTVTAQEATAPVAPVAAAAPVDAAPVVETAMAAGTEAEAAVVTG
EEATAEATGDQTGEGASRRRRGRRGGRRRRRGGAENATGNDALGDDQDDGDEGDDADGTE
PNVGNTSEAAPVAVSQPVRSQPEFDFDDEAEPAAVEAEKPARAAAAVVAAPVAVVSSAVV
EAAVPAVAETAAPVETIAKSETASSPVQTSMLDAIDAATPVQPVAVAAPAAEVKPVVEDV
APVIEAKPVVVEAAPVVESKPVVVEAAPVVESKPDVVEAAPVAEAKPVAVEAAPAVEAPQ
VVETAPIAEQPVAAVVVEAAPVEAAAPVAEAVVTPSIDPVADGHADAAAQAAEAKTDEED
EEAAKRTPPAN
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgccacgcaggctgaagagctgcgtgttgccatcgtggat
ggccagtcgttgtatgacatcgacatcgaacagccgtcgaaggaacagaagaagtccaac
atctacaagggccggatcttccgcatcgagccctcgctggaagcagccttcgttgaatac
ggtggtggccgccacggcttcctgccgctgaaggaaatctcccgcgactacttccaggcc
ggtgtcgaccacaacaaggccggcatccgcgagctgctgagggaaggccaggaaatcgtc
gtccaggtggacaaggaagagcgtggcaacaagggcgctgccctgaccacgttcatctcc
ctggccggccgctacatggtgctgatgccgaactcgcccagcgcgggcggtgtctcccgt
cgcatcgaaggcgaagaccgggccgccctgaaggacgccctggacaagctgaacatcccc
gacgacatgggcgtgatcatccgcaccgccggcgtcggccgcgatgccgaagagctgcag
tgggatctggattacctgctgaacgtctggcgcgccatcgccgaagcggcgctgagcaag
ccggccccgttcctgatctaccaggaatcgcgcctgatcgtgcgcgccctccgtgactac
ctgcgtgccgacatcggcgagatcctggtggacaccgaggagatgtacgagcacgccaag
gagttcatgcagcaggtgatgccgcagaccctgcgcaagctcaagcattacaaggacgac
atcccgctgttcaaccgcttccagatcgaatcgcagatcgagggcgcctacgagcgcaac
gtacgcctgccgtcgggtggttcgatcgtggtcgaccagaccgaagcgctgaccgccgtc
gacgtgaactcctcgcgcgccaccaagggcagcgacatcgaggacaccgccttccagacc
aacctggaagcggccgaggaagtggcccgccagctgcgcctgcgcgacctgggtggcctg
gtggtcatcgatttcatcgacatggcctccaacaagcaccagcgtgaggtcgagaaccgc
ctcgccaacgcgctgaagtacgaccgtgcacgcgtgcaggtcggccgcatctcgcgcttc
ggcctgctggaaatgagccgccagcgcctgcgcccgagcctgggcgagtcgagccagatc
gtctgcccgcgttgcgacggccacggccgcatgcgcagcgtcgagtcgctgtcgctgtcg
atcatccgcgtcgccgaagagcacgcgatgaaggagaacaccgggcaggtgctggtgcag
gccccggtggagatcgccaattacctgttgaacgagaagcgcagcgctctgcgcgagatc
gagcagcgccatgaggcgccgatcgtgatcgtcgccgatgagcagctgcacaccccgcac
tacgccgtcacccgcctgcgcgacaacgagctgggtgaggaaagtggcaggccgagttac
cagcgcggcaccccgcgcaagctgccggtgcacgcgctgaccaagggccagctgaacatc
ccgccgccgatggtgacccaggtcaagcacaactcccccgccccggtgcgtgaggaagtt
gagccggctgcagccccggctccggcaccagtggccgcggtcgctccggccgcagccgcc
agtggtggcgtcgtcggctggctgaagcgcatctttggcggcgagccggcaccggcgccc
gcaccggctccggccgcacgccagccgcaacaggacggtggccgccgtgaccgcaacaag
gatcgcaacaaggaccgcaaggaccgtcgcgatgacagccgcggcaacggcaatgcgcag
cagcagaaggacggcggcaaccgcaaggaccgcggtgagcagcgcaaggacggccgccag
ggtggcaacggcgccaatcctggcactggcaatgcccagcagccgcagcagcagggcaag
cagaaggatcagcagaaggacggccagcagcagccgcagcagaacaagccgcgcaacgaa
ccgcaggcccagaacccgcagcagcagccgaagctgaagcaaccccgacagccgcgtccg
cagcaggacggcgacaagccggccgaaaagccgcagcgcaatgccgccgaagcctctacc
gaagtggtcaccgctgccgctgcagtgaccgcgacggcggtcgtcgccaataccgtgacc
gcgcaggaagccactgcaccggttgcgccggttgccgctgccgcaccggtggacgccgca
ccggtggtcgagaccgccatggccgcaggcaccgaggctgaagccgctgtcgtgaccggt
gaagaggccactgccgaggccacgggcgaccagactggcgaaggcgcgagccgtcgtcgt
cgtggccgtcgtggtggccgccgtcgccgccgcggtggcgccgagaacgcgaccggcaat
gacgccctgggcgacgaccaggacgacggtgacgaaggcgatgacgccgacggcaccgaa
ccgaacgtgggcaacaccagcgaagccgctccggtcgccgtcagccagccggtccgttcg
cagccggagttcgatttcgacgacgaggccgaaccggccgccgtcgaagcagagaagccg
gcccgtgccgccgcagccgtcgtggccgcgccggtcgcggtggtaagcagcgccgtggtc
gaagccgccgttccggccgtcgccgagaccgcagccccggttgagaccattgccaagtcc
gaaacggcgtcctcgccggtgcagaccagcatgctcgacgccatcgacgcagcgaccccg
gtacagccggtcgccgttgccgccccggcggcagaagtgaagccggtcgtggaagacgtc
gctccggtgatcgaagcgaagccggtggtggttgaagccgctccagtggttgagtcgaag
ccggtggtggttgaggcggctccggtcgtggaatcgaagccggacgttgttgaagccgcc
ccggtggctgaagcgaagccggtcgcggttgaagctgccccggcggttgaagcgccgcag
gtcgtcgagaccgcgccgatcgctgaacagccggtcgctgcggtagtggtggaagccgcg
ccggtggaagccgctgcaccggtcgccgaggcggtggtgacgccgtcgatcgacccggtc
gccgatggccacgccgatgcggccgcccaggctgctgaagccaagaccgacgaagaagac
gaagaggctgccaagcgcacgccgccggcaaactga
DBGET
integrated database retrieval system
