Stackebrandtia nassauensis: Snas_4449
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Entry
Snas_4449 CDS
T01194
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sna
Stackebrandtia nassauensis
Brite
KEGG Orthology (KO) [BR:
sna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sna03016
]
Snas_4449
Enzymes [BR:
sna01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Snas_4449
Transfer RNA biogenesis [BR:
sna03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Snas_4449
Prokaryotic type
tRNA splicing ligases
Snas_4449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADD44094
UniProt:
D3Q545
LinkDB
All DBs
Position
4748339..4749526
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AA seq
395 aa
AA seq
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MSFQELDGNGAPIRLWADPASIEEQALAQLRNVAALPWVSGVAVMPDVHYGKGATVGSVI
AMRGAVSPAAVGVDIGCGMTAQRTSLTAEDLPEDLSRLRGAIEKAIPVGRGMHKRSVDVD
HLKTGFRGWHRFWGEFDELAKPVARSLKGRSMQQLGTLGGGNHFIEVCLSDDGQVWLMLH
SGSRNVGNKLAEFHIEKAKALPHNADLPDPDLAVFVNDTPTMDAYRRDLFWAQEYARRNR
AVMMALLREVVRKKFKKVSFDEEISCHHNYVAEEVHDGHEVLVTRKGAIHAGAGRMGIIP
GSMGASSFIVRGLGNADAFESASHGAGRRMSRNQARKRFTAEDLVAQTAGVECRKDSGVV
DEIPSAYKDIDEVIAAQSDLVEVTARLKQVICVKG
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttcaggagctcgacggtaacggcgcaccgatccggctgtgggccgacccggcg
tcgatagaggagcaggcactggcgcagctgcgcaacgtcgcggcgctgccgtgggtgtcg
ggcgtggcggtcatgccggacgtccactatggcaagggcgcgacggtgggttcggtcatc
gcgatgcgcggggcggtctcgcccgcggcggtgggcgtcgacatcggatgcgggatgacg
gcgcagcggacctcgctgacggccgaggacctgcccgaggacctgtcacggctgcgcggc
gccatcgagaaggcgattccggtggggcgcggcatgcacaagcgctcggtggacgtcgac
catctgaagacgggtttccggggctggcaccggttctggggcgagttcgacgagctggcc
aagccggtggcgcggtcgctcaagggccggtcgatgcagcagctggggacgctcggcggc
gggaatcacttcatcgaagtttgcctgtctgacgatgggcaggtgtggctgatgctgcac
tcgggttcgcgcaacgtcggcaacaagctggccgagttccacatcgagaaggccaaggcg
ctgccgcacaacgccgacctgccggatccggacctggccgtgttcgtcaacgacacgccc
actatggacgcgtatcggcgggacctgttctgggcgcaggagtacgcgcgccgcaaccgg
gccgtcatgatggcgctgctgcgcgaggtcgtccgcaagaagttcaagaaggtgagcttc
gacgaggagatctcctgccaccacaactacgtggccgaggaggtccacgacgggcacgag
gtgctggtgacccgcaagggcgccattcacgccggagccggacggatgggcatcatcccg
gggtcgatgggcgcctcgtcgttcatcgtgcgcgggctgggcaacgccgacgccttcgag
tcggcctcgcacggcgccggacgtcggatgagccgcaaccaggcgcggaagcggttcacc
gccgaggacctggtcgcgcagaccgcgggcgtcgagtgccgcaaggactccggggtggtc
gacgagatccccagcgcctacaaggacatcgacgaggtcatcgcggcccagtcggatctg
gtcgaggtgaccgcacggctcaagcaggtcatctgcgtgaagggctag
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