Shinella oryzae: K6301_05775
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Entry
K6301_05775 CDS
T08112
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
soj
Shinella oryzae
Pathway
soj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K6301_05775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soj03019
]
K6301_05775
03009 Ribosome biogenesis [BR:
soj03009
]
K6301_05775
Enzymes [BR:
soj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
K6301_05775
Messenger RNA biogenesis [BR:
soj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K6301_05775
Ribosome biogenesis [BR:
soj03009
]
Prokaryotic type
rRNA processing factors
K6301_05775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
UPA25705
LinkDB
All DBs
Position
complement(1165286..1168174)
Genome browser
AA seq
962 aa
AA seq
DB search
MAEKMLIDASHSEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEDHRRDDDIEPVETAPHTSGSGDNES
IADTIEAVEAEAVEAVEEIQAEPAAEPEVVEASADLAAEPEAPAEKPKKARRPRKAKAKA
EEAPASEEAAPSEGSDDETPGGAMAMAVDTDEVSEPAERKRGRRHRDDDDDDDDHNGEEK
EVIESVGAEDAMEEVPDRVSRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLS
LAGRYSVLMPNTARGGGISRKITNLQDRKRLKEIARDLEVPQGMGVILRTAGANRTRVEV
KRDFEYLMRLWENVRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDISEIVVAGEEGYREA
KAFMKMLMPSHAKVVQPYRDVHPIFSRSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVS
IDVNSGRSTREHSIEETALQTNLEAAEEVARQLRLRDLAGLVVIDFIDMEEKRNNRAVEK
RLKDHLKNDRARIQVGRISHFGLLEMSRQRIRASVLESTMQTCPHCNGTGHIRSQSSVAL
HVLRGIEEYLLKNTTHNITVRTTPDIALYLLNHKRGTIIDYEGRFGVAILIDADAHVGAQ
HFAIDRGEPVENPVKIEQILHFEPEPEDDDVVIEDEIDEEEEEAARPAATAAASQSSASD
ENGRKRKRRRRRRGRGRENGDGADTASFGGEQAGDEDALDDDDADGDAEGLEGAEATKAD
PSSEDGSDRRKRRRRGKRGGRRNRPEDGSVEASADGSDEDGDDSEGEAEKVVAVEVDVTE
VAAPVEETPAEVAAEDASAKPKRARRSRAKAKEEAVTDEVARSEIESQPAAVPEEAEVPA
EPEVEEASEDLDAPAKPTRANRDITKIASEPVVKSSTAKETPSDNEADKPKKGGWWQRRG
FF
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaaaatgcttatcgacgcgtctcactccgaggagacgcgggttgtcgtcgtg
cgcgggaaccgcatagaagagttcgacttcgaatccgaacacaagaaacagatccgcggc
aatatctaccttgccaaggtgacgcgcgtggagccctcgctccaggccgccttcgtcgat
tacggcggcaaccgccacggcttcctggccttcgccgaaatccatcccgactactaccag
attccgctggccgaccgtcaggcgctgctcaaggccgaggccgaggatcatcgccgcgat
gacgatatcgagccggtcgagaccgccccgcacacatccggcagcggcgacaacgaatcg
atcgccgatacgatcgaggccgtggaagccgaagctgtagaagccgtcgaggaaatccag
gccgagcctgccgccgagccggaggtcgtcgaagcctccgccgatctcgcagcggaaccc
gaagcgcccgccgaaaagccgaagaaggcacgtcgcccccgcaaggccaaggcgaaagcc
gaagaagctccggcctccgaggaagccgctccgtccgaaggcagcgacgacgagacgccc
ggcggcgccatggccatggcggtcgatacggacgaggtgtccgagcccgccgagcgcaag
cgcggccgtcgtcatcgtgacgatgacgacgatgatgacgaccacaatggcgaagagaag
gaagtcatcgaatccgtcggcgccgaagacgccatggaagaggttccggaccgcgtgagc
cgcaagccgcgcaagcagtaccgcattcaggaagtcatcaagcgccgccagatcctgctc
gtgcaggtcgccaaggaagagcgtggcaacaagggtgctgctctcaccacttacctgtcg
ctggcaggccgctactcggtcctgatgccgaacacggcgcgcggcggcggcatttcccgc
aagatcaccaacctgcaggaccgcaagcgcctgaaggaaatcgcccgcgacctcgaggtc
ccgcagggcatgggcgtcatcctgcgcacggccggtgccaaccgcacccgcgtcgaggtc
aagcgcgacttcgaatacctgatgcgcctgtgggaaaacgtccgcacgctgacgctcgcc
tccacggctccctgcctcgtctatgaggaaggctcgctgatcaagcgctcgatccgcgac
ctctacaacaaggacatcagcgagatcgtcgttgccggcgaggaaggctatcgcgaagcg
aaagccttcatgaagatgctgatgccgagccacgcgaaggtcgtccagccctatcgcgat
gtgcatccgatcttctcgcgctcgggcatcgaagcgcagctcgaccgcatgctgcagccg
caggtgacgctgaagtccggcggctacatcatcatcaaccagaccgaggcgctcgtctcg
atcgacgtcaactcgggccgctcgacgcgcgagcactccatcgaggagaccgcgctccag
acgaacctggaagcggcggaagaagtggcgcgccagctgcgcctgcgcgaccttgccggc
ctcgtcgtcatcgacttcatcgacatggaggagaagcgcaacaaccgggccgtcgagaag
cgtctgaaggaccatctcaagaacgaccgcgcgcgcatccaggtcggccgcatctcgcat
ttcggcctgctcgaaatgtcgcgccagcgcatccgcgcctcggttctcgaatcgaccatg
cagacgtgcccgcactgcaacggcacgggccatatccgctcgcaatcgtccgtggcgctg
catgtcctgcgtggcatcgaggaatatctcctcaagaacaccacgcacaacatcacggtg
cgcacgacgcccgatatcgcgctctacctgctcaaccacaagcgcggcacgatcatcgac
tatgaaggccgcttcggcgtggccatcctcatcgatgcggatgcccatgtcggcgcgcag
catttcgcgatcgaccgtggcgagcccgtcgagaacccggtcaagatcgagcagatcctg
catttcgaaccggaacccgaagacgatgacgtcgtgatcgaggacgagatcgacgaggaa
gaggaagaagcggcacgcccggccgcaaccgccgcggcgagccagtcctccgcatccgat
gaaaacggccgcaagcgcaagcgtcgccgccgtcgtcgcggccgtggccgtgagaacggc
gacggtgccgataccgcctccttcggcggcgaacaggccggcgacgaagacgcactggat
gacgacgacgcggacggtgacgccgaaggtcttgagggcgcggaagccaccaaggccgac
ccgtcttccgaagacggttcggatcgccgcaagcgccgccgccgcggcaagcgcggtggc
cgtcgcaaccgtccggaagacggcagcgtcgaggcttcggccgatggttccgacgaggat
ggcgatgacagcgaaggcgaggccgaaaaggttgtagccgtcgaagtcgacgtgaccgaa
gtcgccgcccccgtcgaggaaactccggccgaggttgcagccgaggacgcatcggccaag
cccaagcgggcacgccgcagccgcgccaaggccaaggaggaggccgtgaccgacgaggtt
gcccgcagcgagatcgaatcgcagccggccgctgtccctgaagaggcggaagtacctgcg
gagccggaagtcgaagaggcctccgaagacctcgatgcgcccgccaagccgacccgcgcc
aaccgcgatatcaccaagatcgcgtcggagcccgtcgtgaagtcgtccaccgccaaggag
acaccttcggacaacgaggccgacaagcccaagaagggtggctggtggcagcgccgcggg
ttcttctga
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