Sphingorhabdus sp. M41: AZE99_09255
Help
Entry
AZE99_09255 CDS
T04317
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sphg
Sphingorhabdus sp. M41
Pathway
sphg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AZE99_09255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphg03019
]
AZE99_09255
03009 Ribosome biogenesis [BR:
sphg03009
]
AZE99_09255
Enzymes [BR:
sphg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AZE99_09255
Messenger RNA biogenesis [BR:
sphg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AZE99_09255
Ribosome biogenesis [BR:
sphg03009
]
Prokaryotic type
rRNA processing factors
AZE99_09255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AMO72010
UniProt:
A0A127MFL6
LinkDB
All DBs
Position
1945805..1948531
Genome browser
AA seq
908 aa
AA seq
DB search
MTTRMLIDARHQEETRVAVVKGNKIEEFDFESSEHKQLKGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPREDREALLAEEAEHAAEEAALRAQEEEEDDAPADMVRS
EATEELDTALVEVDQDESVDTIDVTEGEIPVENGDDEDDDEDDESEDDSSEDNGDTKGKS
GGRRGRGGRQKGRGKGSMPKASDQARQKRMALRKRYKIQDVIQRRQVVLVQVVKEERGNK
GAALTTYLSLAGRYCVLMPNTSHGGGISRKINNAGDRKRLKSIISDLNLPTSMGCIVRTA
GLSRTKPEIKRDFDYLARLWDEIREKTLSATAPSLIHSDSDLVKRAIRDIYNREIEEVLV
EGANGYTAAKAFMKLLMPSHSKRVKSYADPVSLFQRYGVEDQLSAMYSPEVQLKSGGYLV
INPTEALVSIDINSGRSTREHGIEATAVKTNMEAAAEIARQLRLRDMAGLVVIDFIDMDR
NGNVRKVERAMRDALKNDRARIQVGRISSFGLMEMSRQRLRTGVLEASTKVCPHCEGTGL
VRTASSSALSALRLLEEEAAKGKASMISLRTSQEACIYVLNSKRHEIEDIEQRYGVSIEI
VPDGETEGARMEIQTSGSPPKNMPKFEPIIDDDDDDDQVEEAETVEAEDRSERGDRSERG
DREDGGERPKRKRRRRGRRNRGGDRSESGGSENNGESNSENNAESSSEAAPQPNDTDAGE
PAEKPKARSRRNSARKADAAPAAAAESNGDEQPKPEAKPRARRRSAKSEAPAEQPAVSTE
PDAEAAEEKPKRRRAPRKAKPAAAAPAAEATGEAADATVDKKPPAKRAPRARAKKADSAE
ASDKATPEADKAAPEASKEAKEKAPAKPRKPRATAKPKDEAVAKTSDSDATESSDGSPRQ
GWWQRTFG
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgactacgcgcatgctaatcgacgcgcgccaccaggaagaaacccgggtggcggtcgta
aagggaaacaagattgaggaattcgattttgaatcttccgagcataaacagctcaaaggc
aatatctatctagcaaaagtcacccgcgtcgaaccgtcgctgcaggctgctttcgttgac
tatggtggcaaccgacatggatttctggccttttccgaaatccatcccgactattaccag
attccgagagaagatcgcgaagcgctgctggccgaagaagccgagcatgcagcggaagaa
gccgccttgcgcgctcaggaagaggaagaagacgacgcgccagccgacatggtgcgcagc
gaagccaccgaggagcttgataccgcgctggtcgaagtcgatcaggacgagagcgttgac
acgatcgatgttaccgaaggcgaaatcccggtagaaaatggcgacgatgaagatgatgac
gaggatgatgagtccgaggacgattcttccgaagacaatggcgataccaagggcaagagc
ggaggccgccgcggacgtggtggtcgccagaagggccgcggcaagggcagcatgccgaaa
gccagcgaccaggcgcgccagaagcgcatggccttacgcaaacgctacaagatccaggac
gtaatccagcggcggcaggttgtgctcgtccaggtcgtcaaggaagaacgcggcaacaag
ggcgcggcgctcaccacctatctcagtctcgccggtcgctattgcgtactgatgcccaac
acttcccatggcggcggcatcagccgaaaaatcaacaatgccggcgatcgcaagcggctc
aaatcgattatctctgacctgaatctgcccaccagcatgggctgcatcgtccgcaccgcc
ggactttcccggaccaaaccggaaatcaagcgcgactttgactatctcgctcgcctgtgg
gacgaaatccgcgaaaaaacgctgagcgcgaccgcgccaagcctgatccacagcgacagc
gacctggtcaaacgcgcgatccgcgacatatataatcgcgagatcgaggaagtgctggtc
gagggcgcaaacggctatacagccgcgaaggccttcatgaagctgctgatgcccagccac
agcaagcgcgtgaagagctatgccgatccggtgtcgctgttccagcgctatggcgtcgaa
gatcaattgtcggccatgtattcaccggaagtccagctgaaatccggcggctatctggtg
atcaacccgaccgaggccctggtctcgatcgacatcaactccggacgttcgacccgcgaa
cacgggatcgaggcaaccgcggtcaagaccaatatggaagccgctgccgaaatcgcgcgc
cagctgcgcttgcgcgacatggccggacttgtggtcatcgatttcatcgacatggaccgc
aacggcaatgtccgcaaagtcgaacgggcaatgcgcgatgccttgaaaaacgatcgcgca
cggatccaggttggacgtatctccagctttggcctgatggaaatgagccgccagcgcctg
cgcaccggcgtgctcgaagcatcgaccaaggtctgcccgcattgcgaaggcaccggactg
gtgcggacggcatcgtcctctgccctgtccgcgctccgtctgctcgaagaagaagccgcc
aagggcaaggccagcatgatcagcctgcgcaccagccaggaagcatgcatttacgtgctg
aacagcaagcgtcacgagatcgaggatatcgagcaacgctacggcgtctcgatcgaaatc
gttcccgacggagaaaccgaaggcgcccggatggaaatccagacctccggcagtccaccg
aaaaacatgcccaagttcgaacccatcatcgatgatgacgacgatgacgatcaggttgaa
gaagcggaaaccgtggaagcggaagaccgttcagaacgcggagaccgttcagaacgtggc
gaccgggaagacggtggcgaacgtccgaagcgcaaacggcgtcggcgcggcagacgcaac
cgcggtggtgatcgttccgaatcaggtggttccgagaataacggcgagagcaactcggaa
aataacgccgagagcagcagcgaagccgctccgcagccgaatgatacggacgctggcgaa
ccggcagagaagccaaaagctcgctcacgccggaacagcgctcgcaaggcggacgctgca
cctgctgccgcagccgaaagcaacggcgacgagcaaccgaagcccgaggccaaaccgcgc
gcgagacgtcgttccgccaaaagcgaagccccggctgagcagccagcggtaagcacagaa
ccggatgctgaagcggccgaggaaaagccgaaacggcgccgcgcaccacgcaaggcaaag
ccagcggccgctgcgccagcggctgaagcgactggcgaagctgctgatgccacggttgat
aaaaaaccgccggcaaagcgagcgccaagagcacgagccaaaaaggctgacagcgcggaa
gcgtctgacaaggccactccggaagctgataaggccgctccggaagcgagcaaggaagcc
aaggaaaaggcaccggccaagcctcggaaaccgagagcaaccgccaagccgaaagatgag
gcggtagccaaaacgtccgacagcgacgcaaccgagtccagcgacggttcaccccgtcag
ggctggtggcaacgcacgttcggataa
DBGET
integrated database retrieval system
