Salpingoeca rosetta: PTSG_06172
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Entry
PTSG_06172 CDS
T04136
Name
(RefSeq) uncharacterized protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sre
Salpingoeca rosetta
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sre03016
]
PTSG_06172
Enzymes [BR:
sre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PTSG_06172
Transfer RNA biogenesis [BR:
sre03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PTSG_06172
Prokaryotic type
tRNA splicing ligases
PTSG_06172
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Adeno_PX
Motif
Other DBs
NCBI-GeneID:
16073638
NCBI-ProteinID:
XP_004993065
UniProt:
F2UC58
LinkDB
All DBs
Position
Unknown
AA seq
519 aa
AA seq
DB search
MASKGKVTTSNVETKSRSFKDEQEYLEQLSPCCWRIKKGFVPNMRVEGRVYVNEALNSLM
FEELQQHSQAHGVGGFLPALKQVANVAALPGIVGHSVGLPDIHAGYGFAIGNMAAFDMDN
PEAVVSPGGVGFDINCGVRLLRTNLDVGDVEPVKEQLAQSLFDHIPVGVGSKGVVPMTVQ
DLEEALEMGMDWSLREGYAWPEDKEHCEEYGRMLQADASKVSTRAKKRGLPQLGTLGAGN
HYAEIQVVEEIYDKHAANKMGINRTGQVCVMIHSGSRGLGHQVATDALTAMANAMKRDGI
EVNDRQLACARIGSEEGQNYLKSMAAAANYAWVNRSTMTFLARQAFAKQFKTTPEDLDMH
VIYDVSHNIAKVEKHWVDGKLRNLLVHRKGSTRAFPPHHPLIPVDYQLIGQPVLVGGTMG
TCSYILTGTEQGFADTFGSTCHGAGRAQSRAKSRRTLDYQDVLANLNKKGIAIRVASPKL
VQEEAPESYKDVSEVVDTCHAAGISKKAVKLKPIAVIKG
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaagggcaaggtgaccacgagcaacgtggagaccaagagtcgctccttcaaa
gatgagcaggagtaccttgagcagctctcaccatgctgctggcgcatcaagaagggcttt
gtccccaacatgagggtggaaggccgcgtgtatgtcaacgaggcgctcaactcactcatg
tttgaggagctgcagcaacacagccaggcgcatggtgttggcggcttcctgcccgcgctc
aagcaggtggccaacgtggctgcacttcccggcatcgttggccactctgttggcctgccc
gatatccacgccggctacggctttgccatcggcaacatggctgcctttgacatggacaac
cccgaggccgtcgtctccccaggcggcgttggctttgacatcaactgcggcgtgcggctg
ctgcgcaccaacctcgacgtcggtgatgtggagcccgtcaaggagcagctcgcgcagtcc
ctcttcgaccacatccccgttggcgtcggatcaaagggcgttgtgccgatgacggtgcag
gacctggaagaggcgctggagatgggcatggactggtctctccgcgaagggtacgcgtgg
ccggaggacaaggagcactgcgaagagtacgggcgaatgctgcaggcggacgcgtccaaa
gtctccacgcgcgccaagaagcgcggcctgccacaactcggcacccttggtgccggcaac
cactacgcagagatccaggtcgtggaggagatttacgacaagcacgctgccaacaagatg
ggcatcaacaggactggacaggtgtgtgtgatgatccacagcgggtcgcgcggtctgggc
caccaggttgccaccgatgcgctcacggcgatggccaatgccatgaagcgtgacggcatc
gaggtcaacgacagacagcttgcgtgtgcgcgcatcggctctgaggagggccagaactat
ctcaagtccatggcagccgctgccaactacgcctgggtcaacagatcaaccatgaccttc
ctcgcccgacaggcctttgcaaagcagttcaagacgacaccagaggatctcgacatgcat
gtcatttatgacgtgtcacacaacatcgcaaaggttgagaagcactgggttgacgggaag
ctgcgcaacttgctcgtgcaccgcaagggctccacccgcgcgttcccaccgcaccaccca
ctcatccccgtcgactatcagttgattggccagcctgtgctggttggcgggacaatgggc
acgtgcagctacatcctaacgggcacggagcaagggtttgcggacacgtttggcagcacg
tgtcacggtgccggccgcgcccagtcgcgcgccaagtcccgccgcaccctcgactaccag
gatgtgcttgccaacctcaacaagaaaggcattgccatccgcgttgcctcgcccaagctg
gtacaggaggaggcgccggagtcgtacaaggacgtgagcgaggtggttgacacgtgccac
gcagccggcatcagcaagaaggccgtcaagctcaagcccattgccgtcatcaagggctga
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