Shinella sumterensis: Q9314_03335
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Entry
Q9314_03335 CDS
T09417
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ssum
Shinella sumterensis
Pathway
ssum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q9314_03335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssum03019
]
Q9314_03335
03009 Ribosome biogenesis [BR:
ssum03009
]
Q9314_03335
Enzymes [BR:
ssum01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Q9314_03335
Messenger RNA biogenesis [BR:
ssum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Q9314_03335
Ribosome biogenesis [BR:
ssum03009
]
Prokaryotic type
rRNA processing factors
Q9314_03335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
WLS08818
UniProt:
A0AA50D6S4
LinkDB
All DBs
Position
628873..631761
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AA seq
962 aa
AA seq
DB search
MAEKMLIDASHSEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEDHRRDDDIEPVETAPHASGSGDNES
IADTIEAVEAEAVEAVEEIQAEPAAEPEVVEASADLAAEPEAPAEKPKKARRPRKAKAKA
EEAPASEEAASSEGSDDETPGGAMAMAVDTDEVSEPAERKRGRRHRDDDDDDDDHNGEEK
EVIESVGAEDAMEEVPDRVSRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLS
LAGRYSVLMPNTARGGGISRKITNLQDRKRLKEIARDLEVPQGMGVILRTAGANRTRVEV
KRDFEYLMRLWENVRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDISEIVVAGEEGYREA
KAFMKMLMPSHAKVVQPYRDVHPIFSRSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVS
IDVNSGRSTREHSIEETALQTNLEAAEEVARQLRLRDLAGLVVIDFIDMEEKRNNRAVEK
RLKDHLKNDRARIQVGRISHFGLLEMSRQRIRASVLESTMQTCPHCNGTGHIRSQSSVAL
HVLRGIEEYLLKNTTHNITVRTTPDIALYLLNHKRGTIIDYEGRFGVAILIDADAHVGAQ
HFAIDRGEPVENPVKIEQILHFEPEPEDDDVVIEDEIDEEEEETARPAATAAASQSSASD
ENGRKRKRRRRRRGRGRENGDGADTASFGGEQAGDEDALDDDDAEGDAEGLEGAEATKAD
QSSEDGSDRRKRRRRGKRGGRRNRPEDGSVEASADGSDEDGDDSEGEAGEVVAVEVDVTE
VAAPVEETPAEVAAEDASAKPKRARRSRAKAKEEAVTDEVARSEIEAQPAAVPEEAEVPA
ETEVEEASEDLDAPAKPTRANRDINKIASEPVVKSSTAKETPSDNETDKPKKGGWWQRRG
FF
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaaaatgcttatcgacgcgtctcactccgaggagacgcgggttgtcgtcgta
cgcgggaaccgcatagaagagttcgacttcgaatccgaacacaagaaacagatccgcggc
aatatctaccttgccaaggtgacgcgcgtggagccctcgctccaggccgctttcgtcgat
tacggcggcaaccgccacggcttcctggccttcgccgaaatccaccccgactactaccag
attccgctggccgaccgtcaggcgctgctcaaggccgaggccgaggatcatcgccgcgat
gacgatatcgagccggtcgagaccgccccgcacgcatccggcagcggcgataacgaatcg
atcgccgatacgatcgaggccgtggaagccgaagccgtagaagccgtcgaggaaatccag
gccgagcctgccgccgagccggaggtcgtcgaagcctccgccgatctcgcggcggaaccc
gaagcgcccgccgaaaagccgaagaaggcacgtcgcccccgcaaggccaaggcgaaggcc
gaggaggctccggcctccgaggaagccgcttcgtccgaaggcagcgacgacgagacgccc
ggtggcgccatggccatggcggtcgataccgacgaagtgtccgagcccgccgagcgcaag
cgtggccgccgccatcgtgacgacgacgacgatgatgacgaccacaatggcgaagagaag
gaagtcatcgaatccgtcggcgccgaagacgccatggaagaggttccggatcgcgtgagc
cgcaagccgcgcaagcagtaccgcatccaggaagtcatcaagcgtcgccagatcctgctc
gtgcaggtcgccaaggaagagcgcggcaacaagggcgctgctctcaccacctacctgtcg
cttgcaggccgctactcggtcctgatgccgaacacggcgcgcggcggcggcatttcccgc
aagatcaccaacctccaggaccgcaagcgcctgaaggaaatcgcccgcgacctcgaggtc
ccgcagggcatgggcgtcatcctgcgcacggccggtgccaaccgcacccgcgtcgaggtc
aagcgcgacttcgaatacctgatgcgactgtgggaaaacgtccgcacgctgacgctcgcc
tccacggccccctgcctcgtctatgaggaaggctcgctgatcaagcgttcgatccgcgac
ctctacaacaaggacattagcgagatcgtcgttgccggcgaggaaggctaccgcgaagcc
aaagccttcatgaagatgctgatgccgagccatgcgaaggtcgtccagccctatcgcgac
gtgcatccgatcttctcgcgctcgggcatcgaagcccagctcgaccgcatgctgcagccg
caggtgacgctgaagtccggcggctacatcatcatcaaccagaccgaggcgctcgtctcg
atcgacgtcaactccggccgctcgacgcgcgagcactccatcgaggagaccgcgctccag
acgaacctggaagcggcggaagaagtggcgcgccagctgcgcctgcgcgaccttgccggc
ctcgtcgtcatcgacttcatcgacatggaggagaagcgcaacaaccgggccgtcgagaag
cgcctgaaggaccatctcaagaacgaccgcgcgcgcatccaggtcggccgcatctcgcat
ttcggcctgctcgaaatgtcgcgccagcgcatccgcgcctcggttctcgaatcgaccatg
cagacctgcccgcactgcaacggcacgggccatatccgctcgcaatcgtccgtggcgctg
catgtcctgcgcggcatcgaggaatatctcctcaagaacaccacgcacaacatcacggtg
cgcacgacgcccgatatcgcgctctacctgctcaaccacaagcgcggcacgatcatcgac
tatgaaggccgcttcggcgtggccatcctcatcgatgcggatgcccatgtcggcgcgcag
catttcgcgatcgaccgtggcgaacccgtcgagaacccggtcaagatcgagcagatcctg
catttcgagccggaacccgaagacgatgacgtcgtgatcgaagacgagatcgacgaggaa
gaggaagaaacggcacgcccggccgcaaccgccgcggcgagccagtcctccgcatccgat
gaaaacggccgcaagcgcaagcgtcgccgccgtcgtcgcggtcgtggccgtgagaacggt
gacggtgccgataccgcctccttcggcggcgagcaggccggcgacgaagacgcactggat
gacgacgacgcggaaggcgacgccgagggccttgagggcgcggaagccaccaaggccgac
caatcttccgaagacggttcggaccgccgcaagcgccgccgccgcggcaagcgcggtggc
cgtcgcaaccgtccggaagacggcagcgtcgaggcttcggccgacggttccgacgaggat
ggcgatgacagcgaaggcgaggctggagaggttgtagccgttgaggtcgacgtgaccgaa
gtcgctgcccccgtcgaggaaactccggccgaggttgcagcggaggacgcgtcggccaag
cccaagcgggcacgccgcagccgcgccaaggccaaggaagaggccgtgacggacgaggtt
gcccgcagcgagatcgaagcgcagccggcggctgtccctgaagaggcggaagtgcctgcg
gagacggaagtcgaagaggcctccgaggacctcgatgcgcccgccaagccgacccgcgcc
aaccgcgatatcaacaagatcgcgtcggagcccgtcgtgaagtcgtccaccgccaaggag
acgccttcggacaacgagaccgacaagcccaagaagggcggctggtggcagcgccgcggg
ttcttctga
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