Sinorhizobium terangae: QA637_04795
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Entry
QA637_04795 CDS
T09097
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
steg
Sinorhizobium terangae
Pathway
steg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
steg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QA637_04795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
steg03019
]
QA637_04795
03009 Ribosome biogenesis [BR:
steg03009
]
QA637_04795
Enzymes [BR:
steg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QA637_04795
Messenger RNA biogenesis [BR:
steg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QA637_04795
Ribosome biogenesis [BR:
steg03009
]
Prokaryotic type
rRNA processing factors
QA637_04795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Med3
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
WFU48740
LinkDB
All DBs
Position
complement(1016103..1018904)
Genome browser
AA seq
933 aa
AA seq
DB search
MAEKMLIDASHSEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEEARRDDDVEPVEAASERKPTTVETE
PETIAAVAEVAEIGAVAELVEANAEAPAEVEAVAETPKAKAKPKRTRRTKAKAAEEASEA
AESQDAGEEGGGEMAAMVDTDSISEDVDTRRRRDEDDDDDDAHDGEKEIIESVGAEDAME
EVPDRQIRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTA
RGGGISRKITNLQDRKRLKEIARGLEVPQGMGVILRTAGANRTKVEIKRDFEYLMRLWEN
VRTLTLNSTAPCLVYEEGSLIKRSIRDLYNKDISEIIVSGEEGYKEAKGFMKMLMPSHAK
VVQPYRDVHPIFSRSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREHS
IEDTALQTNLEAAEEVARQLRLRDLAGLVVIDFIDMEEKRNNRAVEKKLKDCLKNDRARI
QVGRISHFGLLEMSRQRIRASVLESTMQTCPHCNGTGHVRSQSSVALHVLRGIEEYLLKN
TTHDITVRTIPEIALYLLNQKRGTITDYEQRFGVSIIIEADAHVGAQHFAIDRGEPVENP
VKIEQLLHFEPEPEEEDVVIEEDLDEEEAEETATERPEQAKAQQADEQGGRKRKRRRRRR
GKGGGQAPEAVAAEADETIESIADETEEAEGEEHALEAAEAADDGDQKRKRRRRGKRGGR
RNKLEATEGETSGEIAAEAAGEDAAVEGAVEAADTADAVAVSAETASVETVSEEAKPAKP
KRTRKKAAAKADADEAAQEAVEAQPETTDPAAEAVEEAEADLEETKPTRANRDLATIASE
PVITSNVSSKTENNDEEPPKPKKGGWWQRRGFF
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaaaatgcttatcgatgcgtctcactcagaggagacgcgcgtcgttgtcgtt
cgcgggaaccgcatagaagaattcgacttcgaatcggaacataagaagcagatccgcggc
aatatttacctggccaaggtgaccagggtggagccttcgctccaggccgccttcgttgac
tacggcggcaaccgccacgggttcctggctttcgccgaaatccatccggactattaccag
atccccctcgccgaccgtcaggcacttttgaaagcggaggccgaagaggcccgccgcgac
gacgacgtcgagccggtcgaggcggcgagcgagcggaaaccgacgacggtcgaaaccgag
ccggaaaccatagcagcggttgccgaggtcgctgagattggcgcggttgcagaactcgtc
gaggcaaacgccgaagcgcctgcggaagttgaagccgtcgccgagacgccaaaggcgaag
gcaaagccgaagcgcacccgtcgcaccaaggcgaaggctgccgaagaagcttctgaggcg
gccgagagccaggacgcaggcgaagagggcggcggcgagatggccgccatggtcgacacc
gattcgatttccgaagacgtcgatacgcgccgtcgccgcgacgaggacgatgacgacgac
gacgcccatgacggcgaaaaggaaatcatcgaatccgtcggcgccgaagacgccatggaa
gaggtgccggaccgtcagatccgcaagccccgcaaacagtaccgcattcaggaggtgatc
aagcgccggcagatcctgctggtccaggttgccaaggaagaacgcggcaacaagggtgct
gcgctgaccacctatctttcgctcgccggccgttactcggttctgatgccgaacaccgcc
cgcggcggcggcatttcccgcaagatcaccaatctccaggaccgcaagcggctcaaggaa
atcgcccgcggcctcgaagtgccgcagggcatgggcgtgatcctgcgcacggccggtgcg
aaccgcaccaaggtcgagatcaagcgcgacttcgaatatctgatgcgcctgtgggaaaat
gtccgcacgctgacgctgaattcgaccgcaccctgcctcgtctacgaggaaggcagcctg
atcaagcgctcgatccgcgatctctacaacaaggacatcagcgagatcatcgtttccggc
gaggaaggctacaaggaagccaagggcttcatgaagatgttgatgccgagccacgcgaag
gtcgtgcagccctatcgcgacgtgcatccgatcttctcacgttccggcatcgaggcgcag
ctcgatcgcatgttgcagccgcaggtaacgctgaagtcgggcggctacatcatcatcaac
cagacggaagcgctcgtttcgatcgacgtcaactccggccgctcgacccgcgagcactcg
attgaggacacggccctccagaccaaccttgaggctgccgaggaagtggcgcgccagttg
cgtctgcgcgaccttgccgggcttgtcgtcatcgacttcatcgacatggaggaaaagcgc
aataaccgcgcggtcgaaaagaagctcaaggattgcctgaagaacgatcgggcacgcatc
caagtcggccgcatctcgcatttcggcctgctcgaaatgtcgcgccagcgcatccgtgct
tcggttcttgagagcacgatgcagacctgcccgcactgcaacggcaccggtcacgtccgc
tcgcagtcctccgtcgcgctgcatgtgttgcgcggcatcgaggagtatctgctcaagaac
acgacgcacgacatcaccgtacgtacgatccccgaaatcgccctgtacctgctcaatcag
aagcgcggcacgatcacggattacgagcagcgcttcggcgtctcgatcatcatcgaggcc
gatgcccatgtcggcgcgcagcatttcgcgatcgaccggggcgagccggtcgagaacccg
gtcaagatcgaacagctcctgcatttcgagccggaaccggaagaagaagacgtcgtgatc
gaggaagatctggacgaggaggaagcggaagagaccgcgaccgagcgtccggagcaggcg
aaggcgcagcaggccgacgaacaaggcggccgcaagcgcaagcgtcggcgtcggcgccgc
ggcaagggtggcggccaggcgccggaagcggtcgcagccgaagctgacgagacgatcgag
agcatcgccgacgaaaccgaggaggccgagggcgaggaacacgctctggaggctgccgaa
gcagcagacgatggcgaccagaagcgcaagcgtcgacgccgcggcaagcgtggcggccgc
cgcaacaagctggaagcgaccgagggcgaaacctccggcgaaatcgccgcggaggctgca
ggcgaagacgccgctgtggaaggagcggtagaagccgcggataccgcagacgcggttgcg
gtttcggccgagaccgcatccgtggagacggtgtcggaagaagcgaagccggccaagccg
aagcgtactcgcaagaaggcggcggccaaggccgacgctgacgaggcggcgcaggaagcg
gtcgaagcacagccggagacgacagatcccgcggcagaagcggtggaggaagccgaggcc
gatctcgaagagacaaagccgaccagggccaatcgtgacctcgcgacgattgcgtccgaa
ccggttatcacctcgaatgtttcgagcaagacggagaacaacgacgaggaacctccgaag
ccgaaaaagggcggctggtggcagcgtcgcggcttcttctga
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