Salmo trutta (river trout): 115169769
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Entry
115169769 CDS
T08542
Name
(RefSeq) protein patched homolog 1-like isoform X1
KO
K11101
patched 2
Organism
stru
Salmo trutta (river trout)
Pathway
stru04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
115169769
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Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
Motif
Other DBs
NCBI-GeneID:
115169769
NCBI-ProteinID:
XP_029581553
Ensembl:
ENSSTUG00000013955
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All DBs
Position
31:complement(22459552..22495419)
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AA seq
1460 aa
AA seq
DB search
MASDPRVPGAGVFGDLPPNYMRSPPPVNSDLLRRPSYCHAAFALKQISKGKAVGQKAPLW
VRARFQALLFSLGCHIQRHCGKVLFIGLLVFSALSVGLRVAAIETDIEQLWVEAGSRVSR
ELRYTKEKQGEESVFTSQMLIQTPKQEGTNILTQGALLLHLEAALSASKVQVSLFGKSWD
LNKICYKSGVPIIENVMIERMIDKLFPCMIVTPLDCFWEGAKLQGGSAYLPGMPDIQWMN
LDPLKLMEELSQFTSLEGFREMLDKAQVGHAYMNRPCLDPNDPECPLSAPNKDLRESPDI
AGRLQGGCHGFSKKFMHWQEELILGGRVKDTQNALQSAEALQTMFLLMSPKQLYEHFKDD
YEIHDINWNEDKATAILESWQRKFVEVAHGSIPQNSTSEIHAFSTTTLNDIMKSFSDVSV
IRVAGGYLLMLAYACVTMLRWDCAKSQGAVGLAGVLLVALSVAAGLGLCSLLGLSFNAAT
TQVLPFLALGIGVDDMFLLAHSFTETGINIPFKERTGDCLRRTGTSVALTSINNMIAFFM
AALVPIPALRAFSLQAAIIVVFNFAMVLLIFPAILSLDLHRREDKRLDILCCFYSPCSSR
VIQIQPQEFSDANDNTTTTTHSHAPGTQTTTTYTGSTIITSTQITTTVQAFTQCDAAGQH
IVTILPPTSQISTSPPSVVVASSPVPPSPTDSYGSQLFSPSSSTRDLLAQMDESKEAREC
VPLPFFRWNLSSFARDKYAPLLLKPESKVVVVVLFVALLGLSLYGTTMVHDGLYLTDIVP
RDTKEYDFINAQFKYFSFYNMYLVTMDGFDYARSQRLLIQLHNSFISVKYVVKDSDQQLP
RMWLHYFQDWLRGLQAAFDADWESGRITWDNYRNGTEDGVLAYKLLIQTGSKKDPFNYNQ
LTSRRLMNEEGLIHPEVFYIYLTVWVSNDPLGYAASQGNFYPQPREWIHDKYDTTGENLR
IPAAEPLEFAQFPFYLNGLRQASDFIESIESVRAICEEFTRKGVLNYPNGYPFLFWEQYI
GLRHWFLLAVSVVLACTFLVCAILLLNPWTAGIIVFILAMMTVELFGIMGLIGIKLSAIP
VVILIASVGIGVEFTVHIALAFLTAIGNRNRRSAVALEHMFAPVIDGAISTLLGVLMLAG
SEFDFILRYFFAVLAILTVLGILNGLVLLPVLLSLMGPPPEVTPADNGSRLPTPSPEPLP
PPMTHHGYYGGHGPQGPRQQAFSESSDSEYYSETTTTSGIGEEYKYCDRSPYITPPTSHI
LLEDSKNPSFPKLTVVKPFKEGPTVTAQKDLLNESSLNAVTSVSSQLTQWDNKHDYKSDQ
GPRRQHLPSDRTQGPERTNHCGPRSQTNRGPHQNRTKMPAYNGGTAPSSAVTTMVTATAS
VTVAVHPSLPGAYHGYMHEGYVDSESDCFEDTKRTSPSCGKATQSSKRESLEVEDLESVQ
NQHQANQAQVGPRIQAAKDY
NT seq
4383 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggatcccagagtcccaggggccggtgtttttggagatttacccccaaattat
atgcgttctccgccgccagtaaactcagatcttctccggagacccagctactgccacgct
gctttcgcattaaaacagatttctaaggggaaggctgtgggtcagaaagccccgttgtgg
gttcgggcgaggttccaggctctcctattttctttgggctgtcacatccagcgacattgt
ggaaaagtccttttcattggactgcttgtgttcagtgccttgtctgtgggtttgcgggtc
gctgccattgagacggacattgagcaactatgggttgaagccggtagccgagtgagtcgg
gagctgcgctacaccaaggagaaacagggagaggagtctgtgttcacgtcacagatgctc
atacaaacccccaaacaggaagggaccaacattctgacacagggtgctttgctgcttcac
ctggaggcagcgctctcagccagcaaggtccaggtgtctctgtttggaaaatcatgggat
ctcaataaaatctgctacaaatctggtgtccctatcatagaaaatgtcatgattgaaagg
atgattgacaagctgttcccctgtatgattgttaccccactggactgtttttgggaaggt
gcaaagctccagggggggtcagcatacttaccggggatgcctgacatccagtggatgaac
ctggaccctctgaagctgatggaggagctcagccagttcaccagtctggagggcttcagg
gaaatgctggacaaggcccaggtgggccacgcttacatgaaccgcccctgcctggacccc
aacgaccccgagtgccccctcagcgcccccaacaaggacctgagagagagtcctgacatt
gccgggcggctccaaggcggttgccacggtttctccaaaaagttcatgcactggcaggag
gagcttatcctgggcggccgggtcaaggacacacagaatgctttgcagagtgcggaggcc
ctccagaccatgtttctcctgatgagccccaagcagctctacgagcactttaaggacgac
tatgagatccatgacatcaactggaatgaggacaaggccaccgccatcctggagtcctgg
caaaggaagtttgtagaggtggctcatggcagtatcccccagaactccacttcagagatc
cacgccttctccaccaccaccctcaacgacatcatgaagtccttctctgatgtcagtgtc
atccgggtggctggaggctacctgctcatgctggcctacgcctgtgtgaccatgctccgt
tgggactgtgccaagtcccagggggccgtggggctggctggcgtgctcctggtggctctg
tctgtggcagctggcctggggctgtgctctctgctgggcctgtcctttaacgctgccacc
acacaggttctccccttcctggctctggggatcggtgtggatgacatgttccttctggcc
cactccttcactgagactggcatcaacatcccctttaaggaaaggacaggggactgcctg
aggaggactggcaccagtgtggcgctcacctccatcaacaacatgatcgccttcttcatg
gcagccctggtccccatcccagcactgcgtgccttctctctgcaggcggccattattgtg
gtgttcaacttcgccatggtgctcctcatcttcccggccattctgagtttggacctgcac
cgtcgggaggacaagcgtctggacatcctgtgttgtttctacagcccctgctcctcccgg
gtcatccagatccaaccccaggagttctccgatgccaacgacaacaccaccaccaccacc
cacagccacgcgcctggcacccagactacaacaacctacacaggctccaccatcattacc
agcacccagatcaccaccaccgtccaggccttcacccagtgtgacgcggcaggccagcac
atagtcaccatcctgccccccacctcccagatctccaccagccctccctctgtggtggtg
gcctcctcccctgttcccccctcccccaccgactcctacggctcccagctcttcagccca
tccagctccacccgggacctcctggcccagatggatgagtccaaggaggccagggagtgt
gttccactccccttcttccgctggaacctgtcaagcttcgcccgggacaagtacgctcct
ctcctcctaaagccagagagcaaggtggtggtcgtggtcctcttcgtggctctgctgggg
ctcagcctgtacggaaccaccatggtccatgatggactctacctgaccgacattgtgccc
cgcgacaccaaggagtacgacttcatcaacgcccagttcaagtacttctctttctacaac
atgtacctggtgaccatggacggctttgactatgcccgctcccagcgtctcctcatccaa
ctgcacaactccttcatctcggtcaagtatgtggtgaaggacagcgaccagcagctgccc
cggatgtggctgcactatttccaagactggctcagaggactgcaggctgccttcgatgca
gactgggaatcaggcagaatcacctgggataactaccgtaacggcactgaggatggtgtt
ctggcctacaagctgctcatccagacaggctccaagaaggaccccttcaactacaaccag
ctgacttctcgtcgtctgatgaatgaggagggtctgattcacccagaggtcttctatatc
tacctgactgtgtgggtgagcaatgaccctctgggctatgctgcctctcagggtaacttc
taccctcagcctcgcgagtggatccacgacaagtatgacaccaccggagagaatctgcgc
atccctgccgcggagcccctggagtttgctcagttccctttctacctgaacggcctgagg
caggcgtccgacttcatcgagagcatcgagagcgtgcgcgccatctgcgaggagttcacc
cgtaaaggtgttctcaactaccccaacggttaccccttcctgttctgggagcagtacatc
ggcttgcgacactggttcctcctggcggtcagcgtggtgctagcctgcaccttcctggtc
tgtgccatcctcctgctcaacccctggaccgctggcatcattgtcttcatcctggccatg
atgacggtggagctgtttggtatcatgggcctgatcggcatcaagctcagtgccatccca
gtggtcatcctcatcgcctctgtgggcatcggcgtcgagttcactgtccatatcgcactg
gcctttctgacggccataggcaataggaacaggcgttctgcggtggccctggagcacatg
tttgcccctgtgattgacggggccatctctactctgttaggggtcctcatgctggctggc
tccgagtttgacttcatcctgaggtacttctttgcggtgctggctattctgaccgtgctg
gggatcctgaatggactggtgctgctgcccgtgctgctctccctcatgggcccacccccg
gaggtcaccccggccgacaacggcagccgcctgcccaccccgtcgccggagcccctcccc
cctcccatgacccaccacggctactacggaggacacggtccacagggcccacgacaacag
gccttctcagagtcatcggactctgagtactactctgaaacgactaccacatcaggaatt
ggggaggagtataagtactgtgaccgcagtccttacatcacccctcctacctctcatata
ctactggaggacagcaagaaccccagcttccccaaactcacggtggtgaaaccgttcaaa
gagggcccgaccgtaaccgctcagaaagatctcttaaatgagtcttctctgaatgcggtg
acttcggtcagctctcaactcacgcagtgggataacaaacatgattacaaatctgaccag
ggacccaggaggcaacatttacccagtgacaggacccagggtcctgagaggactaatcac
tgtggtcccaggtctcagaccaacagagggcctcatcagaacaggactaagatgccggcc
tataatggcggtaccgcgcccagtagtgctgttactaccatggttacggccacagcctct
gtgactgtggctgtgcaccccagcttgccgggggcctaccatgggtacatgcacgagggc
tacgtggacagtgaatcagactgttttgaggacactaagaggacttcaccatcttgtggg
aaagctacccaatcttccaagcgtgaatccttggaggttgaagacctggaatctgtacag
aaccagcatcaggcgaaccaggcacaagttggcccacggatccaggcagccaaagattac
tag
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