Thermococcus pacificus: A3L08_07550
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Entry
A3L08_07550 CDS
T05192
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tpaf
Thermococcus pacificus
Brite
KEGG Orthology (KO) [BR:
tpaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tpaf03016
]
A3L08_07550
Enzymes [BR:
tpaf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
A3L08_07550
Transfer RNA biogenesis [BR:
tpaf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
A3L08_07550
Prokaryotic type
tRNA splicing ligases
A3L08_07550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ASJ07183
UniProt:
A0A218P8T5
LinkDB
All DBs
Position
1367438..1368877
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AA seq
479 aa
AA seq
DB search
MVPLKRIDKIRWEIPKFDKRMRVPGRVYADDALIEKMRQDRTLEQAANVAMLPGIYKYSI
VMPDGHQGYGFPIGGVAAFDVKEGVISPGGVGYDINCGVRLIRTNLREQEVRPRIKELVD
TLFKNVPSGLGSKGRVRLHWTQLDDVLADGAKWAVENGYGWEEDLEHLEEGGRMEGADPE
AVSQKAKQRGAPQLGSLGSGNHFLEVQVVDKIFNEEIAKAYGLFEGQVVVMVHTGSRGLG
HQVASDYLRVMEKANRKYGIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITH
WVRESFEEVFKRKAEDMEMHIVYDVAHNIAKVEEHEVDGKKVKVVVHRKGATRAFPAGHP
DVPRAYRDVGQPVLIPGSMGTASYVLAGAEGSMRETFGSSCHGAGRLLSRKAATRQYRGD
RLRNELAQRGIYVRAASLRVVAEEAPGAYKSVDNVVNTVHEAGIANLVARMRPMGVAKG
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggttccgctgaagaggattgacaaaatccgctgggagataccaaagttcgacaagagg
atgcgcgttccggggagggtctacgccgacgacgcgctaatagagaagatgcgccaggac
aggacgcttgagcaggcggcaaacgttgcgatgctcccgggcatttacaagtactccatc
gtaatgccggacggacatcagggttatggcttcccaatcggtggggtagctgcctttgac
gtaaaggagggagtaataagccctggaggagtgggctatgacatcaactgtggagtacgg
ctaatccgaacaaatttacgtgagcaagaagtaagacctcgcatcaaggagctcgttgac
acgctcttcaagaacgtgccaagtggccttggaagtaaaggtcgcgtaaggctccactgg
acacagctggacgatgttttagcggacggtgccaagtgggccgttgagaatggctacggc
tgggaggaggaccttgagcacctcgaagaaggcggaaggatggaaggcgccgatccggag
gcggtaagccagaaggcgaagcagcgtggagcgccccagctcggctccctcggttctgga
aaccacttcctcgaggtccaggtcgtagataagatattcaacgaggagattgccaaagcc
tacggcctctttgaggggcaggtcgttgttatggttcacaccggctcgcgcggtctcggt
catcaggttgcgagcgactacctcagggtaatggagaaggccaacaggaagtatggaatt
ccgtggcccgaccgcgaactggtaagcgtccccttccagagcgaggaggggcagcgctac
ttcagcgcgatgaaggcagctgcaaacttcgcctgggccaacaggcagatgataacccac
tgggtcagggagagcttcgaggaggtcttcaagagaaaggccgaggacatggagatgcac
atagtctacgatgtggcgcacaacatagcgaaggtcgaggaacacgaggttgacggtaag
aaggtcaaggtcgtcgtccacaggaaaggtgcaacgagggccttccctgccggacatccg
gacgttcccagggcctaccgcgacgtcggccagccggttctgattccaggttcaatgggt
acggccagctacgtcctggctggagcagagggctcaatgagagagacctttggaagctcc
tgccacggcgccggaaggctcctgagcaggaaagccgcaacgaggcagtaccgcggcgat
aggctcaggaacgagctcgcccagaggggcatctatgtccgcgctgcatcgctccgcgtg
gttgcggaagaggcacccggagcctacaagagcgttgacaacgtcgtcaacaccgtccac
gaggctggcatagccaacctcgttgctagaatgcgcccgatgggtgttgccaagggctga
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