Salipiger profundus: Ga0080559_TMP4046
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Entry
Ga0080559_TMP4046 CDS
T04656
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tpro
Salipiger profundus
Pathway
tpro03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Ga0080559_TMP4046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpro03400
]
Ga0080559_TMP4046
Enzymes [BR:
tpro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ga0080559_TMP4046
DNA repair and recombination proteins [BR:
tpro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Ga0080559_TMP4046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
UvrB_inter
ResIII
AAA_30
SecA_DEAD
AAA_16
MFD_D3
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
APX24842
UniProt:
A0A1U7D9R0
LinkDB
All DBs
Position
3654139..3657594
Genome browser
AA seq
1151 aa
AA seq
DB search
MGGAPEGFDARLVLAEADKAGGPVIHIARDDKRMVAMADALAFFSPDMPVVRFPAWDCLP
YDRVSPNPDISAARMATLAGLVHGMPQRFVLLTTLSAAMQFIPARDILREAAFSARVGDR
IDEAALRAFLVRMGFSQAPTVTEPGDYAIRGGIIDVFPPGEGGPVRLDLFGDVLDGARRF
DAATQRTTEKLDVVELAPVSEVILDEAAITRFRQNYRIEFGAGTSDDPLYEAVSAGRKQQ
GMEHWLPFFHERLETLFDYLPDAPVLMDDQLTPARLARWESIEDQYESRRHAMTQKGRLD
SVYKPVPPGQLYLDDAAWEAALDGRRAVQFHPLAQASGPGVVDAGGRIGRNFAPERQQES
LSLFGALADHVKAKMQGGPVLIASWSEGARERLTGLIEDEGLAEAIPVANGTRIGKRGLH
LAVWALETGFEAPWGDPKNRQRITVISEQDVLGDRLIRAPKKKRKAENFLTEAQSLSPGD
LVVHVDHGIGRYHGMEVITAAGAAHECLLLEYAEGARLYLPVENIELLSRYGHDEGLLDR
LGGGAWQAKKAKLKERIREMADKLIRVAAERALRKAPVIDPPPGAWESFCARFPYTETDD
QLHAIEDTLSDMTSGNPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVIAPTTLLARQ
HYKSFAERFRGFPLNVAPLSRFVSSSQAAKTREGISKGTVDIAVGTHALLAKNIRFQNLG
LLIIDEEQHFGVGHKERLKQLRSDIHVLTLTATPIPRTLQLSLSGVRDLSIIGTPPVDRL
SIRTYVSEFDAVTIREALLREHYRGGQSFYVVPRITDLPEIEEFLREQVPEVSFVVAHGQ
MPAGELDDKMNAFYDGKFDVLLATTIVESGLDIPTANTMVVHRSDMFGLSQLYQIRGRVG
RSKTRAYAYLTTKPRAKLTDAAQKRLRVLGSLDTLGAGFTLASQDLDIRGAGNLLGEEQS
GQMRDVGYELYQSMLEEAIAKIKSGETEGILEDDGQWAPQINLGVPVLIPEDYVPDLDVR
LGLYRRLSELSTKVELEGFAAELIDRFGKLPKEVNTLMLVVRIKAMCKKAGISKLDGGPK
GATIQFHNDKFASPEGLVAFIQAQNGLAKIKDNKIVVRRDWKKDSDKIKGAFAIALDLAE
RAGTVKRRKEA
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgggcggcgcgcccgaagggttcgacgcgcgcctcgtcctggccgaggccgacaaggcc
ggcggtcccgtcatccacatcgcccgcgacgacaagcgcatggtggcgatggccgatgcg
ctggcgttcttctcgcccgacatgcccgtggtgcgctttcccgcctgggactgcctgccc
tatgaccgggtgtcgccgaaccccgacatctcggccgcgcgcatggcgacgctggcgggg
ctcgtgcacgggatgccgcagcgcttcgtgctgctgacgacgctttcggcggcgatgcag
ttcatcccggcccgcgacatcctgcgcgaggcggcgttttccgcccgcgtcggtgaccgc
atcgacgaggcggcgctgcgggccttcctcgtgcggatggggttcagccaggcgccgacg
gtgaccgagcccggcgactacgcgatccggggcggcatcatcgacgtctttccgccgggc
gagggcgggccggtgcgactcgacctgttcggtgacgtgctggacggggcgcgccggttc
gatgccgccacgcagcggaccaccgagaagctcgacgtggtcgaactggcgccggtctcc
gaggtcatcctcgacgaggccgccattacgcgctttcgccagaactaccgcatcgagttc
ggcgccggcacctcggacgacccgctctacgaggcggtgagcgcggggcgcaagcagcag
ggcatggagcactggctgccgttcttccacgagcggcttgagaccctgttcgattacctg
cccgatgcgccggtgctgatggacgaccagcttacccccgcgcggctggcgcggtgggag
agcatcgaggaccaatacgagtcgcgccggcacgcgatgacccagaaggggcggctcgat
tccgtctacaagccggtgccgccgggccagctctaccttgacgacgccgcctgggaggcg
gcgctcgacgggcggcgcgcggtgcagttccatccgctcgcgcaggccagcgggcccggc
gtcgtcgacgcgggcggccggatcgggcgcaacttcgcgcccgagcgccaacaggaaagc
ctgagccttttcggcgccttggcagatcatgttaaggcaaagatgcagggcggcccggtg
ctcatcgcgtcgtggtccgagggcgcccgcgagcgactgaccggcctgatcgaagacgag
gggctggccgaggcgatcccggtggcgaacggcacccgcatcggcaagcgcggcctgcac
cttgcggtctgggcgctggaaaccggcttcgaggcgccctggggcgacccgaagaaccgc
cagcggatcacggtgatctcggagcaggacgtgctcggcgaccggctgatccgcgcgccc
aagaaaaagcgcaaggccgagaacttcctgaccgaggcgcagtcgctcagcccgggcgat
ctggttgttcacgtcgaccacggcatcgggcgctatcacggcatggaggtcatcaccgcc
gcgggcgccgcgcatgaatgcctgctgctggaatacgccgagggtgcgcggctctacctg
ccggtcgagaacatcgagctgctgtcgcgctacgggcatgacgaggggctgctcgaccgt
ctgggtggcggtgcctggcaggccaagaaggcgaagctcaaggagcgcatccgcgagatg
gcggacaagctcatccgcgtcgctgccgaacgcgcgctgcgcaaggcgccggtcatcgac
ccgccgcccggcgcgtgggagagcttctgcgcgcggttcccctacaccgagaccgacgac
cagctgcatgccatcgaggacacgctgtcggacatgaccagcggcaacccgatggaccgg
ctgatctgcggcgacgtgggcttcggcaagaccgaggtcgcgatgcgcgcggccttcgtc
gcggccatgtccggggtgcaggtcgcggtcatcgcgccgacaaccctgcttgcccggcag
cactacaagagctttgccgaacggtttcggggcttcccgctcaacgtggcgccgctgtcg
cggttcgtgtcctcgtcgcaggccgccaagacgcgcgagggcatctcgaaaggcaccgtc
gacatcgccgtcggcacccacgcgctgctggccaagaacatccggttccagaacctcggg
ctgctgatcatcgacgaagaacagcatttcggcgtcggccacaaggaacggctgaaacag
ctgcgctcggacatccacgttcttacgctgaccgcgacgccgatcccgaggacgctgcag
ctgtcgctgtcgggcgtacgggacctgtcgatcatcggcacgccgccggtcgaccgcctg
tcgatccgcacctatgtctccgagttcgacgcggtcaccatccgcgaagcgctgctgcgc
gagcactaccgtggcggacagagcttctacgtggtgccgcgcatcaccgacctgcccgag
atcgaggaattcctgcgcgagcaggtgcccgaggtctccttcgtggtggcgcatggccag
atgccggcgggcgagctcgacgacaagatgaacgccttctacgacggcaagttcgacgtg
ctgctggccacgacgatcgtggagtcgggcctcgatattcccaccgcgaacacgatggtg
gtgcaccggtcggacatgttcggcctgagccagctctaccagatccgcggccgcgtcggc
cgctccaagacccgggcctatgcctacctgacgacgaagccgcgcgcgaagctcaccgac
gccgcgcagaagcgcctgcgggtgctgggctcgctcgacacgctcggcgcgggcttcacg
ctggcaagccaggatctcgacattcgtggcgccggcaacctgctgggcgaggaacagtcg
ggccagatgcgcgacgtgggctacgagctttaccagtcgatgctggaagaggcgattgcc
aagatcaagtcgggcgagaccgagggcatcctcgaggacgacggccagtgggcgccacag
atcaatctcggcgtgccggtgctgatccccgaggactacgtgcccgatcttgacgtgcgg
ctcggtctctaccggcggctcagcgagttgtcgaccaaggtcgagctcgaaggcttcgcc
gccgaactcatcgaccggttcggcaagctgccgaaggaggtgaacacgctgatgctcgtc
gtgcgcatcaaggcgatgtgcaagaaggccggcatctcgaagctcgacggcgggccgaag
ggggcgacgatccagttccacaacgacaagttcgcctcgcccgaggggcttgtggccttc
atccaggcgcagaacgggttggcgaagatcaaggacaacaagatcgtcgtgcgtcgcgac
tggaagaaggacagcgacaagatcaagggtgccttcgccatcgcgctcgacctcgccgag
cgggccgggaccgtgaagcgccgcaaggaggcctga
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