Trachemys scripta elegans (red-eared slider): 117878979
Help
Entry
117878979 CDS
T07347
Symbol
PTCH1
Name
(RefSeq) protein patched homolog 1 isoform X1
KO
K06225
patched 1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
117878979 (PTCH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
Motif
Other DBs
NCBI-GeneID:
117878979
NCBI-ProteinID:
XP_034629668
LinkDB
All DBs
Position
6:84320529..84409264
Genome browser
AA seq
1507 aa
AA seq
DB search
MKRWSVSSSLRKEAPAAQQPSCPPGSPQSSSALRGITEDPARGSPKQQQQQRQQPRPGGG
NMASAVNVSEPESSSGAGGGGCCRDLDRPGRSCSRRRRRTGGNRRAAAPDLEYLQRPSYC
DAAFALEQISKGKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGL
RAANLETNVEELWVEVGGRVSRELNYTRQKIGEEAMFNPQLMIQTPQEDGANVLTTEALR
QHLDSALQASRVHIYMYNRQWKLEHLCFKSGELITEAGYMDQIIEYLYPCLIITPLDCFW
EGAKLQAGTAYLLGKPPLQWINFDPLEFLEELKKINYQVESWEEMLNKAEVGHGYMDRPC
LNPTDPDCPVTAPNKNSTKPLDVALVLSGGCYGLSKKYMHWQEELIVGGTVKNGTGKLVS
AQALQTMFQLMTPKQMYEHFKGYEYVSHINWNEDKAAAILEAWQRMYVEVVHQSVAQNST
QKVLSFTTTTLDDILKSFSDVSVIRVASGYLLMLAYACLTMLRWDCAKSQGAVGLAGVLL
VALSVAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDR
TGECLKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAIL
SMDLYRREDRRLDIFCCFTSPCTSRVIQIEPQAYADNDNTRYSPPPPYSSHSFAHETQIT
MQSTVQLRTEYDPHTQVYYTTAEPRSEISVQPVTVTQDNLSCQSPESTSSTRDLLSQFSD
SNMHCLEPPCTKWTLSSFAEKHYAPFLLKPKAKVVVIFLFLGLLGVSLYGTTRVRDGLDL
TDIVPRETREYDFIAAQFKYFSFYNMYIVTQNADYPNIQHLLYDLHKSFSNVTYVLLEEN
KQLPKMWLHYFRDWLQGLQDAFDSDWETGKITYNNYKNGSDDAVLAYKLLVQTGNRDKPI
DISQLTKQRLVDADGIINPNAFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMP
ETRLRIPAAEPIEYAQFPFYLNGLRETADFVEAIEKVRAICNNYSSLGVPSYPNGYPFLF
WEQYIGLRHWLLLSISVVLACTFLVCALFLLNPWTAGIIVLVLALMTVELFGMMGLIGIK
LSAVPVVILIASVGIGVEFTVHVALAFLTAIGDKNRRAVLALEHMFAPVLDGAVSTLLGV
LMLAGSEFDFIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGPYPEVSPANGRNRLPTPS
PEPAPNIVRFALPPGHTNNGSDSSDSEYSSQTTVSGISEELHQYEATQSSGAPVHQVIVE
ATENPVFARSTVVQPETRCHQPSPKLQSNPEAGSQQTWHHNRQPRRELREGLRPPPYRPR
RDAFEISTEGHSGPSNRDRSGHRARSHNIRSPAFTAMGTSVPAYCQPITTVTASASVTVA
VHPAVHSHNSHGGGFPSYEGYHETDHGTFEDPHVPFNVRCERRNSKVEVIELQDVECEER
TNGNSSD
NT seq
4524 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggtggtctgtcagcagcagcctgcggaaagaagcgccagcagcccagcaaccc
tcctgtccccctggatcgccccaaagcagcagcgcgctgcggggaatcacagaggaccca
gcccgtgggtcgccaaaacaacagcagcagcagaggcagcagccccgtcccggcggcggc
aacatggcctcggctgttaacgtttcggagccggagagcagcagcggtgctggtggcggt
ggctgctgcagagacctcgatcggccggggagaagctgtagcagaaggcggagaaggacc
ggagggaacagacgcgccgcggcaccggatctggagtatctgcagcggccaagctactgc
gatgcagcttttgccttggagcagatttcaaaggggaaggctactggaagaaaagcaccg
ttgtggctaagagcgaagtttcagagactattatttaaactgggctgttacattcaaaaa
aactgcggaaagtttttggttgttggcctccttatatttggggctttcgctgtaggatta
agggcagctaatctcgaaaccaacgtggaggagctctgggtagaagttggtggacgagtg
agtcgggagttaaattacacgcgccagaagattggagaagaggccatgtttaatccccag
ctcatgattcagacaccacaagaagatggtgctaatgtactaacaacagaagcactcaga
cagcaccttgactctgcacttcaagccagcagggtacacatttatatgtacaacagacaa
tggaaattggaacatttatgttttaaatcaggagaacttatcacagaagcagggtacatg
gaccagattatagaatatctttatccttgtttaatcatcacgcctttggactgcttctgg
gagggggcaaagttacaggcagggactgcctatctattagggaaacctcctttgcagtgg
ataaactttgaccccttagaattcttggaagagttaaaaaaaataaactatcaagtagag
agttgggaggagatgctgaataaagcagaggttggtcatggttatatggatcgaccttgc
ctgaatcctactgatcccgattgtccagtcacagcccccaacaaaaattcaaccaaacct
cttgatgtggcccttgttttgagtggtggatgctacggactgtcaaaaaagtacatgcac
tggcaggaggagttgattgtaggtggaacagtcaagaatggtactggaaaacttgtcagt
gctcaggctttacagaccatgtttcagttaatgactcctaagcaaatgtatgaacacttc
aaggggtatgagtatgtttcacacatcaactggaatgaagacaaggcagccgcaattctg
gaagcctggcagaggatgtatgttgaggttgttcatcaaagtgttgcacaaaactctact
cagaaggtgctttcctttacgacaactactctggatgacatcctaaaatcattttctgat
gtcagtgttatcagagttgctagcggctacttattaatgcttgcctatgcctgtttaacc
atgctgcggtgggactgtgccaagtcccagggtgccgtggggctggcaggagtcttgttg
gttgcactctcagtggctgcaggattgggcctgtgctcattgattggaatttcctttaat
gctgccacaactcaggttttgccttttcttgctcttggagttggagtagatgacgttttc
cttttggcacatgcatttagtgaaacggggcagaataagagaattccatttgaggataga
acaggtgaatgtttgaagcgaacaggagcaagcgtcgcccttacatctatcagcaatgtt
actgccttctttatggctgccttaattcctattcctgctttacgggcattttcacttcaa
gctgctgttgttgtggtattcaactttgccatggttctgctaatttttcctgctattcta
agcatggacctttaccgtcgggaggacaggagattggatatattctgctgctttacaagt
ccatgtactagcagagtgattcagattgagcctcaagcatatgcagataatgataacact
cgctacagccctccaccaccctacagcagtcacagttttgcacatgaaactcagattaca
atgcaatctacagtgcagctgcgcacagaatatgaccctcatacccaggtgtactacact
acagcagagccccgctcagaaatatctgtgcagccagtcacagtgacacaggataacctc
agctgccagagcccagaaagcacaagctcgacaagggatttgctttcccagttttcagac
tcgaacatgcattgtcttgagccaccctgtactaaatggacgctctcatcttttgccgaa
aagcattacgctccattcctgctaaaaccaaaagccaaggtagtggttattttccttttc
ctgggtttacttggtgtcagtctttacggtactacccgggtgagagatggactggatctc
acagacattgtaccacgggaaacccgagaatatgactttattgctgcacaattcaagtac
ttctccttctacaacatgtatatagtgacacagaacgcagactaccccaacatccagcac
ttactttatgaccttcacaaaagtttcagcaatgttacatatgttttgttggaggaaaat
aagcagcttcccaaaatgtggttgcactactttcgagactggctccaaggtcttcaagat
gcatttgacagtgactgggaaactgggaaaatcacatacaacaattataaaaatggatct
gatgatgctgttctggcctacaaacttctggtgcaaacaggcaaccgcgacaagcccatc
gacatcagtcagttgactaaacagcgtctggtggatgcagatggaatcattaacccaaat
gctttctacatctacctgacagcctgggttagcaatgaccccgtggcctacgctgcctct
caagccaacatccggcctcaccgtccagaatgggtccatgacaaagcagactatatgcca
gaaacaaggctgagaattccagcagctgagcccattgaatatgctcagtttcctttctac
ctcaatggattgcgtgaaactgctgactttgtggaagctattgagaaagtgagagcgatc
tgtaacaactacagcagccttggggtccccagctacccaaatggatacccatttcttttt
tgggaacagtacattgggcttcgtcactggcttctcttgtctattagcgtggttctggct
tgcacatttctggtgtgtgccctctttctcctgaacccctggacggctgggatcattgtg
ctggtgctggctctgatgactgtggagctgtttggcatgatgggtctaattggaataaag
ctgagtgcagtgcctgtggtcatcctgattgcttctgttggcataggagtggaattcact
gttcatgttgctttggcatttttaaccgccataggagacaagaaccgcagggctgtcctt
gcattggagcacatgtttgcaccagtattggatggagctgtgtctactctgcttggagtg
ttaatgcttgcagggtccgagtttgactttattgtcaggtatttctttgctgttttggca
attttaaccattctgggagttttaaatggattggtgctgcttccagttcttctttcattc
tttggaccatatcctgaggtttctccagctaacggacggaacagattgcctactccatct
cctgagcccgcccctaacatcgtgaggtttgcactgccacctggacacacaaataatgga
tcagattcatctgattccgagtacagttctcagactacagtgtcaggaatcagtgaggaa
ctccatcagtacgaggccactcagagctctggtgcaccagtccaccaagtaatagtggaa
gcaactgagaatcctgtctttgccagatcgactgtggttcagccagagacaagatgtcat
cagccaagtccaaaattacagtctaacccagaagccgggtcccagcagacatggcatcat
aacagacaacctagacgagaactgagggaaggactacgaccgcccccttacaggccgcgc
agggacgcttttgaaatttctactgaagggcattctggacctagcaatagggaccgctcg
ggccatagggctcgctctcataacattagaagcccagcattcactgccatgggtacttca
gtgccagcatactgccagcctatcactactgtgactgcctccgcttcagttactgttgct
gtacaccctgctgtgcacagccataactctcatggaggaggctttccatcttacgaagga
taccatgaaactgaccatggaacatttgaggacccccatgtgccttttaatgtacggtgt
gagaggagaaactctaaagtagaagtaatagaactgcaagatgttgaatgtgaagaaagg
acaaatggcaacagctcagattaa
DBGET
integrated database retrieval system
